View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6223_low_7 (Length: 205)
Name: NF6223_low_7
Description: NF6223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6223_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 31074615 - 31074796
Alignment:
| Q |
12 |
tcatcactcttacaaccatcaatttcattacctatagtctgaacactcttataagtatacctctttgctaagaagagataagcacacaaattcaaagcat |
111 |
Q |
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| T |
31074615 |
tcatcactcttacaaccatcagtttcattacctatcttctgaacactcttataagtatacctctttgctaagaagagataagcacacaaattcaaagcat |
31074714 |
T |
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| Q |
112 |
taataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaacttttaccattcatttc |
193 |
Q |
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| T |
31074715 |
taataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaacttttaccattcttttc |
31074796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 31063203 - 31063386
Alignment:
| Q |
10 |
catcatcactcttacaaccatcaatttcattacctatagtctgaacactcttataagtatacctctttgctaagaagagataagcacacaaattcaaagc |
109 |
Q |
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| T |
31063203 |
catcatcactcttaccggcatcaatttcattacctatcctctgaacactcttataagtatacctctttgctaagaagagataagcacacaaattcaaagc |
31063302 |
T |
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| Q |
110 |
attaataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaacttttaccattcatttc |
193 |
Q |
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| T |
31063303 |
attgataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaacttttaccattcttttc |
31063386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 31057169 - 31057292
Alignment:
| Q |
58 |
tcttataagtatacctctttgctaagaagagataagcacacaaattcaaagcattaataattgccaacatccaataaaacctatccaaacgacttgaatt |
157 |
Q |
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||||||||||||||||||||| || || |||| | | |||| |||||||| | ||||| |||||||||||||||||| ||||||||||||| ||||| |
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| T |
31057169 |
tcttataagtatacctctttgatatgacgagaaacacgcacacattcaaagaactaatagctgccaacatccaataaaagttatccaaacgactcgaatt |
31057268 |
T |
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| Q |
158 |
tatatccttcccaatccaactttt |
181 |
Q |
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|||||||||||||||||||||||| |
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| T |
31057269 |
tatatccttcccaatccaactttt |
31057292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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