View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6224_low_5 (Length: 242)
Name: NF6224_low_5
Description: NF6224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6224_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 38484895 - 38484665
Alignment:
| Q |
12 |
atgaatcacattcatgtctaattttatgtacatgcatccaattttgtgagtaactactattacnnnnnnnnaggggatgagtaaaactgtaaaaggattg |
111 |
Q |
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| T |
38484895 |
atgaatctcattcatgtctaattttatgtacatgcatccaattttcagagtaactactattacttttttttaggggatgagtaaaactgtaaaaggattg |
38484796 |
T |
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| Q |
112 |
ggaaagatgaatgtgattgtgaatgcacgtgaacgtagaggggctgaagttgatccatccatataaccctgtggggtatgattatgaatgatgagtgaaa |
211 |
Q |
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| T |
38484795 |
ggaaagataaatgtgattgtgaatgcacgtgaacgtagaggggctgaagttgatccatccatataaccctgtggggtatgattatgaatgatgagtgaaa |
38484696 |
T |
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| Q |
212 |
aagtaaagtgaattccaaatggaagcactta |
242 |
Q |
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| T |
38484695 |
aagtatagtgaattccaaatggaagcactta |
38484665 |
T |
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