View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6225_high_10 (Length: 265)
Name: NF6225_high_10
Description: NF6225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6225_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 3896105 - 3896317
Alignment:
| Q |
1 |
aacattaccggtaagactacaatccattgacttctaatgatacaatcttaatcattcgactagcaagagtgtggcattttgtcctttcttaacagtgccg |
100 |
Q |
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| T |
3896105 |
aacattaccagtaagactacaacccattgacttctaatgatacaatcttaagcattcaactagcaagagtgtggcattttgtcctttcttaacagtgctg |
3896204 |
T |
|
| Q |
101 |
actttctgaatgtgttgaaaacctacactgttacttgaaacatagcctgatatgcattctaagtaaaaattattttgctatgcaatacttcttaaatttg |
200 |
Q |
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||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3896205 |
actttctaaatgtgctgaaaacctacacagtttcttgaaacatagcctgatatgcattctaagtaaaaattattttgccatgcaatacttcttaaatttg |
3896304 |
T |
|
| Q |
201 |
aagctaattattt |
213 |
Q |
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||||||||||||| |
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| T |
3896305 |
aagctaattattt |
3896317 |
T |
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