View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6225_high_12 (Length: 251)
Name: NF6225_high_12
Description: NF6225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6225_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 15808240 - 15807987
Alignment:
| Q |
1 |
cttctctatagttgcttcacggatctgcaaaaaactcatctttagtgttcagtacaatgattgatga---gaagtataattaaataatttaaatttggca |
97 |
Q |
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| T |
15808240 |
cttctctatagtttcttcacggatctgcaaaaaactcatctttagtgttcagtacaatgattgatgatgagaagtataattaaataatttaaatttggca |
15808141 |
T |
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| Q |
98 |
ctaccctggctgtcaattatattacgttaaaaagcatacatnnnnnnncggaaactttttgacgaaataatta-tttacctcattagatgcaggcctatt |
196 |
Q |
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|||||||||||||| | |||||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||||||||||||| ||||| |
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| T |
15808140 |
ctaccctggctgtccaatatattacgttaaaaagcatacataaataaacggaaactttttgaagaaataataattttacctcattagatgcaggtctatt |
15808041 |
T |
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| Q |
197 |
ccttatgtctatgttggcaagcaatagtataaggtgcgccctttgattctccac |
250 |
Q |
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| T |
15808040 |
ccttatgtctatgttggcaagcaatagtataaggtgctccctttgattcgccac |
15807987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 45930664 - 45930434
Alignment:
| Q |
1 |
cttctctatagttgcttcacggatctgcaaaaaactcatctttagtgttcagtacaatgattgatgagaag---tataattaaataatttaaatttggca |
97 |
Q |
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|||||||| |||| |||||||||||||||| ||||| || |||||| ||| || |||||||||||| || || ||||||| ||||||||||| | |
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| T |
45930664 |
cttctctacagtttcttcacggatctgcaacaaacttatttttagttctcaatatgatgattgatgagtagaaataaaattaaaatatttaaatttgtcc |
45930565 |
T |
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| Q |
98 |
ctaccctggctgtcaattatattacgttaaaaagcatacatnnnnnnncggaaactttttgacgaaataattatttacctcattagatgcaggcctattc |
197 |
Q |
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|||||||||| ||||| ||||||||||||||| | |||||||||||| || ||||| ||||||||||| |||||||||||||||| |
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| T |
45930564 |
ctaccctggccgtcaaatatattacgttaaaa----------------cagaaactttttgaagatataataatttacctcatcagatgcaggcctattc |
45930481 |
T |
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| Q |
198 |
cttatgtctatgttggcaagcaatagtataaggtgcgccctttgatt |
244 |
Q |
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|||| |||| | |||||||| ||||||||||||||| |||||||||| |
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| T |
45930480 |
cttacgtctgtattggcaagtaatagtataaggtgctccctttgatt |
45930434 |
T |
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