View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6225_high_2 (Length: 575)
Name: NF6225_high_2
Description: NF6225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6225_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 536; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 19 - 570
Target Start/End: Original strand, 42666749 - 42667300
Alignment:
| Q |
19 |
gatgaagggtatcatagagattagacctccccatcccctgcttcttcatagaattcattttctccatccttaaaccagctctgaaactttcaatgaaact |
118 |
Q |
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| T |
42666749 |
gatgaagggtatcatagagattagacctccccatcccctgcttcttcatagaattcattttctccatccttaaaccagctctgaaactttcaatgaaact |
42666848 |
T |
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| Q |
119 |
accagctttgttatcaacaccggggttgggatttggatacaccaatagatcaattccagtttcttcaccactaatggttggtaactccactacttcctca |
218 |
Q |
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| T |
42666849 |
accagctttgttatcaacaccggggttgggatttggatacaccaatagatcaattccaggttcttcgccactaatggttggtaactccactacttcctca |
42666948 |
T |
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| Q |
219 |
tctatatctaccgaacttgaactactaatgctatctattctaacaaagtcaccctgcaccttgaacttccatgctggcatcttgaacggaggtggaggag |
318 |
Q |
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| T |
42666949 |
tctatatctaccgaacttgaactactaatgctatctattctaacaaagtcaccctgcaccttgaacttccatgctggcatcttgaacggaggtggaggag |
42667048 |
T |
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| Q |
319 |
gaggcggtggaggtattgagttcaatggcgactcattaccagtaatcacagaaaaatcctcatcctttgtttttgacataatcatagctgaaacatgatg |
418 |
Q |
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| T |
42667049 |
gaggcggtggaggtattgagttcaatggcgactcattaccagtaatcacagaaaaatcctcatcctttgtttttgacataatcatagctgaaacatgatt |
42667148 |
T |
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| Q |
419 |
ttgtgacggcgaaacagagttaagtttcttctgtttgtttttcttagaatagaacaaatcaggaaaaggagaagaataagaaggcacagtagtagcaggt |
518 |
Q |
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| T |
42667149 |
ttgtgacggcgaaacagagttaagtttcttctgtttgtttttcttagaatagaacaaatcaggaaaaggagaagaataagaaggcacagtagtagcaggt |
42667248 |
T |
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| Q |
519 |
tcagaattcagaatgctctgaaaattttcaacgcttttatgtctgtgctgct |
570 |
Q |
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| T |
42667249 |
tcagaattcagaatgctctgaaaattttcaacgcttttatgtctatgctgct |
42667300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 515 - 567
Target Start/End: Original strand, 42667380 - 42667432
Alignment:
| Q |
515 |
aggttcagaattcagaatgctctgaaaattttcaacgcttttatgtctgtgct |
567 |
Q |
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|||||||||||| | |||| |||||||||||||||||||||||||||| |||| |
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| T |
42667380 |
aggttcagaatttataatgttctgaaaattttcaacgcttttatgtctatgct |
42667432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 558
Target Start/End: Original strand, 42667311 - 42667354
Alignment:
| Q |
515 |
aggttcagaattcagaatgctctgaaaattttcaacgcttttat |
558 |
Q |
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| T |
42667311 |
aggttcagaatttataatgttctgaaaattttcaacgcttttat |
42667354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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