View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6225_high_20 (Length: 237)

Name: NF6225_high_20
Description: NF6225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6225_high_20
NF6225_high_20
[»] chr2 (2 HSPs)
chr2 (1-222)||(43552466-43552685)
chr2 (8-222)||(43548473-43548687)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43552466 - 43552685
Alignment:
Q  1 aacattgatattaatgtacaagttttttacacatagcacttaatattttcaatttaggagccnnnnnnntaatcaatatgaatggtaaccctgtagataa 100  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  43552466 aacattgatattaatgtacaagttttttacaca--gcacttaatattttcaatttaggagccaaaaaaataatcaatatgaatggtaaccctgtagataa 43552563  T
Q  101 gagctttgaaaatctgaattttcactttccttatctgattcagcagctccatccccaatttcctttcttttctttctccacttggatttcctaaggctgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43552564 gagctttgaaaatctgaattttcactttccttatctgattcagcagctccatccccaatttcctttcttttctttctccacttggatttcctaaggctgt 43552663  T
Q  201 gttcaactagcatcacactaag 222  Q
    ||||||||||||||||||||||    
T  43552664 gttcaactagcatcacactaag 43552685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 43548473 - 43548687
Alignment:
Q  8 atattaatgtacaagttttttacacatagcacttaatattttcaatttaggagccnnnnnnntaatcaatatgaatggtaaccctgtagataagagcttt 107  Q
    |||| |||||||||||||| ||||||||| || ||||||||||| |||| |||||       ||||||||||||||| ||||||||||||||||||||||    
T  43548473 atatgaatgtacaagttttctacacatagaacataatattttcattttaagagccaacaaattaatcaatatgaatgataaccctgtagataagagcttt 43548572  T
Q  108 gaaaatctgaattttcactttccttatctgattcagcagctccatccccaatttcctttcttttctttctccacttggatttcctaaggctgtgttcaac 207  Q
    |||||||||||| |||||||||||||||||||||||||| ||| || ||  ||||||||||||||||||||||  ||||||||||||| | |||||||||    
T  43548573 gaaaatctgaatcttcactttccttatctgattcagcagttccgtctccgctttcctttcttttctttctccaactggatttcctaagccagtgttcaac 43548672  T
Q  208 tagcatcacactaag 222  Q
     ||||||||||||||    
T  43548673 aagcatcacactaag 43548687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University