View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6225_high_3 (Length: 412)
Name: NF6225_high_3
Description: NF6225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6225_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 16970550 - 16970763
Alignment:
| Q |
14 |
ctttaggcgtgtactacatacataagattataaatgatacataaccaacatacttaaataaatgctaataatatttctatcactgttattatattaannn |
113 |
Q |
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| T |
16970550 |
ctttagacgtgtacaacatacataagattataaatgatacatgaccaacatacttaaataaatgctaataatatttctatcattattattatattaattt |
16970649 |
T |
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| Q |
114 |
nnnnnnncgagataagattataaaaatgttaacttttttgataagttaaactttttagcctgtattagtttttcacatattcaaatatgttactataaac |
213 |
Q |
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| T |
16970650 |
ttttt--cgagataagattataaaaatgttaacttttttgataagttaaactttttagcctgtattagtttttcacatattcaaatatgttattataaac |
16970747 |
T |
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| Q |
214 |
tataatagaaatatga |
229 |
Q |
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| T |
16970748 |
tgtaatagaaatatga |
16970763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 4435135 - 4435224
Alignment:
| Q |
140 |
tgttaacttttttgataagttaaactttttagcctgtattagtttttcacatattcaaatatgttactataaactataatagaaatatga |
229 |
Q |
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| T |
4435135 |
tgttaactttttcaataatttaaacttattagtatacattaatttttcgcatatacaaatatattactataaattagaattgaaatatga |
4435224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 20953189 - 20953137
Alignment:
| Q |
177 |
attagtttttcacatattcaaatatgttactataaactataatagaaatatga |
229 |
Q |
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| T |
20953189 |
attaatttttcacatatttaaatgtattattataaactataattgaaatatga |
20953137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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