View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6225_high_4 (Length: 370)
Name: NF6225_high_4
Description: NF6225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6225_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 364
Target Start/End: Complemental strand, 34819307 - 34818957
Alignment:
| Q |
14 |
gagatcattcatcagtcattgaggtataatagcacttcattgtcaatatgtaaacacgtttgaagaataacaagtgtacctgtcagcaataatttgagtt |
113 |
Q |
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| T |
34819307 |
gagatcattcatcagtcattgaggtataatagcacttcattgtcaatatgtaaacacgtttgaagaataacaagtgtacctgtcagcaataatttgagtt |
34819208 |
T |
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| Q |
114 |
tctagtgtgctcaacaaattacaaatttgcgacaacaaaaattagtcaatgctcatctgcaactatatatgtgctaaatttctgccatgtgcactatata |
213 |
Q |
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| T |
34819207 |
tctagtgtgctcaacaaattacaaatttgcgacaacaaaaattagtcaatgctcatctgcaactatatatgtgctaaatttctgccatgtgcactatata |
34819108 |
T |
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| Q |
214 |
ctagacacattttatctgaattttgcaggtgatgcaagaagatatcattgatgatgtggataatgtcaaaatgcctcaacttgtctatgtttcgagagag |
313 |
Q |
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| T |
34819107 |
ctagacacattttatctgaattttgcaggtgatgcaagaagatatcattgatgatgtggataatgtcaaaatgcctcaacttgtctatgtttcgagagag |
34819008 |
T |
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| Q |
314 |
agaaagtcttctagtccccaccatttcaaagctggagccctcaatattctt |
364 |
Q |
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| T |
34819007 |
agaaagtcttctagtccccaccatttcaaagctggagccctcaatgttctt |
34818957 |
T |
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