View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6225_high_5 (Length: 351)
Name: NF6225_high_5
Description: NF6225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6225_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 32774770 - 32774447
Alignment:
| Q |
11 |
tcatcatcaaataagtcctactctgtttttcaaaactgtaattgttttctctattttagggagttaaaccagggaccaggggtaaacgtggcttgggnnn |
110 |
Q |
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| T |
32774770 |
tcattatcaaataagtcctactctgtttt-caaaactgtaattgttttctctattttagggagttataccagggaccaggggtacacgtggcttgggttt |
32774672 |
T |
|
| Q |
111 |
nnnnactttatcaaccaatatagcttgagtaattagaaccacgccagcaatggagactgcactttgaagagcacatcttgcaactcgactaggatctgct |
210 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32774671 |
ttttactttatcaaccaatatagcttgagtagttagaaccacgccagcaatggagactgcactttgaagagcacatcttgcaactcgactaggatctgct |
32774572 |
T |
|
| Q |
211 |
actccagcattcaaaagatcttcatatgtgccagtcatggcattgtatccgattctccagtcaaatgttctagtcttctcgacaacaacatctccatcaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32774571 |
actccagcattcaaaagatcttcatatgtgccagtcatggcattgtatccgattctccagtcaaatgttctagtcttctcgacaacaacatctccatcaa |
32774472 |
T |
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| Q |
311 |
ctccagcattagctgcaattgattt |
335 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
32774471 |
ctccagcattagctgcaattgattt |
32774447 |
T |
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