View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6225_low_1 (Length: 796)
Name: NF6225_low_1
Description: NF6225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6225_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 442990 - 443400
Alignment:
| Q |
19 |
gcttttattattggaacttcttctgtgtagaattcatagcaggatgtttctgccatctgtgtagaattcattcattattattattctcaaatgaagcttc |
118 |
Q |
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| T |
442990 |
gcttttattattggaacttcttctgtgtagaattcatagcaggatgtttctgccatctgtgtagaattcattcattattattattctcaaatgaagcttc |
443089 |
T |
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| Q |
119 |
tgccttcggtagttccttgtttttgtcactctctcaggttcaactttgtggtctaggggaacatttttgttgatgttgttgttcagattgtgtttgagtt |
218 |
Q |
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| T |
443090 |
tgccttcggtagttccttgtttttgtcactctctcaggttcaactttgtggtctaggggaacattcttgttgatgttgttgttcagattgtgtttgagtt |
443189 |
T |
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| Q |
219 |
ttctcaattgcattagagagtaacttgtgtgtatgtcgtgctaa-tacccaatttaaggaaactataattttggtttctgagtttttaagcactagtcat |
317 |
Q |
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| T |
443190 |
ttctcaattgcattagagagtaacttgtgtgtatgtcgtgctaagtacccaatttaaggaaactataattttggtttctgagtttttaagcactagtcat |
443289 |
T |
|
| Q |
318 |
atactcatatcatatataacaatccctaaatttattattcattagtgattagtcaattggtctctagattcagacactaatatgattgatgcttgcagat |
417 |
Q |
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| T |
443290 |
atactcatatcatatataacaatccctaaatttatcattcattagtgattagtcaattggtctctagattcagacactaatatgattgatgcttgcagat |
443389 |
T |
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| Q |
418 |
tcagggactaa |
428 |
Q |
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| T |
443390 |
tcagggactaa |
443400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 457 - 785
Target Start/End: Original strand, 443394 - 443724
Alignment:
| Q |
457 |
ggactaatgttatgggtccttacatatttagggaccaaacttatggttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttacc |
556 |
Q |
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| T |
443394 |
ggactaatgttatgggtccttacatatttagggaccaaacttatggttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttacc |
443493 |
T |
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| Q |
557 |
ag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatc |
654 |
Q |
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| T |
443494 |
agaggaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatc |
443593 |
T |
|
| Q |
655 |
ttaccttaggtagtttaagcctaattatgattatgtatttttatttcttaggatcaagacagaagctttatcttttctacttgagaacaagaagcagatt |
754 |
Q |
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| T |
443594 |
ttaccttaggtagtttaagcctaattatgattatgtatttttatttcttaggatcaagacagaagctttatcttttctacttgagaacaagaagcagatt |
443693 |
T |
|
| Q |
755 |
atagaaattgatgattcagacagtgatgatg |
785 |
Q |
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| T |
443694 |
atagaaattgatgattcagacagtgatgatg |
443724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 518 - 603
Target Start/End: Complemental strand, 465466 - 465379
Alignment:
| Q |
518 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
603 |
Q |
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| T |
465466 |
ttgccatgagagtgcttgtgattctgtggaagctttacaagagggaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
465379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 518 - 600
Target Start/End: Original strand, 444670 - 444754
Alignment:
| Q |
518 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcac |
600 |
Q |
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| T |
444670 |
ttgccaaaagagtgcttgtgattctgtggcggctttaccagaggaaagtgtggtttgatgaaaaaacagcaaatgctatttgcac |
444754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 29571791 - 29571722
Alignment:
| Q |
185 |
ttgttgatgttgttgttcagattgtgtttgagttttctca---attgcattagagagtaacttgtgtgta |
251 |
Q |
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| T |
29571791 |
ttgttgaggttcttgttcagattgtgtttgagtttgctcaattattgcattagaaagtaacttgtgtgta |
29571722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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