View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6225_low_10 (Length: 272)
Name: NF6225_low_10
Description: NF6225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6225_low_10 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 23147864 - 23147603
Alignment:
| Q |
10 |
agatgaagatggaggtggagggagggaggtaggcgaacgtagaggataggagaaaagacagattccgatttgtttcaggtagagcatgggcaaaaaataa |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
23147864 |
agatgaagatggagatggagggagggaggtaggcgaacgtggaagataggagaaaagatagattccgatttgtttcaggtaaagtatgggcaaaaaataa |
23147765 |
T |
|
| Q |
110 |
gaaaaggggataagatatttttaactcagcctatacttaggataggaaatacaaagatttgactggataagattaatcaaaggtttaatttatcatatcc |
209 |
Q |
| |
|
|||||||||||| ||||||| |||| ||| ||||||||||||||| ||||| |||| |||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23147764 |
gaaaaggggatatgatatttctaacacagtctatacttaggatagaaaatataaaggtttgac-ggataagatgaatcaaaggtttaatttatcatatct |
23147666 |
T |
|
| Q |
210 |
attcggtgcgtcaaacggaagatttgaatagaatatgatatggttatcctatcctacctcctt |
272 |
Q |
| |
|
||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23147665 |
atttggtacgttaaacggaagatttgaatagaatatgatatggttatcctatcctacctcctt |
23147603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 12855199 - 12855282
Alignment:
| Q |
80 |
tgtttcaggtagagcatgggcaaaaaataagaaaaggggataagatatttttaactcagcctatacttaggataggaaatacaaag |
165 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||||| |||||| ||||||| |||| |||| ||| | ||||||| |||||||||| |
|
|
| T |
12855199 |
tgttacaggaagagcatgggcaaaa--taagaaaaagggataggatatttctaacccagcttattatcaggatagaaaatacaaag |
12855282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 52343904 - 52343828
Alignment:
| Q |
192 |
gtttaatttatcatatccattcggtgcgtcaaacggaa-----gatttgaatagaatatgatatggttatcctatcct |
264 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| ||||| | ||| |||||||||| |||||||||||| |
|
|
| T |
52343904 |
gtttaatttatcatatccttt-ggtgcgtcaaacggaacggaagatttaagtagcatatgatatgtttatcctatcct |
52343828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University