View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6225_low_12 (Length: 251)
Name: NF6225_low_12
Description: NF6225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6225_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 48749507 - 48749267
Alignment:
| Q |
11 |
cacagaaatcgaacaactacgcaatgcaaactcttctatcgccggcaccgtgctccggcaaattcacggcagcgccactctcaatctcagccatttccgt |
110 |
Q |
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| T |
48749507 |
cacagaaatcgaacaactacgcaatgcaaactcttctatcgccggcaccgtgctccggcaaattcacggcagcgccactctcaatctcagccatttccgt |
48749408 |
T |
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| Q |
111 |
ccctcgtcttccccgaacaattctgaagcaaaattctacgccctcactccctcttaaattgaatagttcttctccctctttcagttccttcatttctcat |
210 |
Q |
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| T |
48749407 |
ccctcgtcttccccgaacaattctgaagcaaaattctacgccctcactccctcttaaattgaatagttcttctccctctttcagttccttcatttctcat |
48749308 |
T |
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| Q |
211 |
cgttcatggaagcttcccttcaccgtaaccgcttcttctca |
251 |
Q |
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| T |
48749307 |
cgttcatggaagcttcccttcaccgcaaccgcttcttctca |
48749267 |
T |
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