View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6225_low_16 (Length: 249)

Name: NF6225_low_16
Description: NF6225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6225_low_16
NF6225_low_16
[»] chr7 (11 HSPs)
chr7 (34-235)||(6964336-6964538)
chr7 (34-235)||(38431442-38431644)
chr7 (34-234)||(3541036-3541237)
chr7 (34-178)||(44017716-44017861)
chr7 (34-178)||(26153200-26153345)
chr7 (34-235)||(16547052-16547255)
chr7 (34-235)||(16618407-16618610)
chr7 (126-235)||(17152097-17152207)
chr7 (138-178)||(43549279-43549319)
chr7 (34-69)||(8257621-8257656)
chr7 (119-178)||(8258021-8258079)
[»] chr2 (6 HSPs)
chr2 (34-226)||(38315923-38316116)
chr2 (34-178)||(40677696-40677841)
chr2 (117-178)||(1506563-1506624)
chr2 (117-178)||(1503359-1503420)
chr2 (117-178)||(4577956-4578017)
chr2 (101-170)||(40139235-40139304)
[»] chr5 (12 HSPs)
chr5 (34-235)||(2499875-2500077)
chr5 (34-235)||(26338032-26338235)
chr5 (34-235)||(9690812-9691014)
chr5 (34-235)||(33320791-33320993)
chr5 (34-178)||(33921150-33921295)
chr5 (84-226)||(36330820-36330961)
chr5 (100-235)||(35432351-35432496)
chr5 (120-178)||(2453417-2453475)
chr5 (119-178)||(19689686-19689745)
chr5 (138-178)||(19686322-19686362)
chr5 (138-178)||(21680512-21680552)
chr5 (124-222)||(36334994-36335092)
[»] chr1 (7 HSPs)
chr1 (34-226)||(34552561-34552753)
chr1 (34-226)||(6205930-6206122)
chr1 (34-226)||(18392441-18392633)
chr1 (34-224)||(33898375-33898565)
chr1 (34-178)||(23441208-23441353)
chr1 (34-178)||(50196883-50197028)
chr1 (34-185)||(3087660-3087794)
[»] chr4 (12 HSPs)
chr4 (34-226)||(15851222-15851414)
chr4 (34-215)||(26703380-26703560)
chr4 (34-235)||(13979183-13979385)
chr4 (34-178)||(19928929-19929075)
chr4 (61-225)||(21217450-21217610)
chr4 (146-235)||(37176799-37176889)
chr4 (117-178)||(10386065-10386126)
chr4 (117-178)||(33400289-33400350)
chr4 (139-178)||(10247968-10248007)
chr4 (65-111)||(37176748-37176794)
chr4 (117-178)||(11702513-11702574)
chr4 (138-178)||(33400245-33400285)
[»] chr6 (7 HSPs)
chr6 (34-235)||(35027000-35027202)
chr6 (34-235)||(15578784-15578984)
chr6 (34-235)||(33679056-33679258)
chr6 (34-235)||(12746858-12747061)
chr6 (34-235)||(28894347-28894550)
chr6 (119-178)||(34502476-34502535)
chr6 (117-178)||(5618143-5618204)
[»] chr3 (12 HSPs)
chr3 (34-226)||(27054921-27055113)
chr3 (34-178)||(28327493-28327638)
chr3 (34-178)||(28330818-28330963)
chr3 (34-178)||(3305899-3306043)
chr3 (34-178)||(4250435-4250580)
chr3 (117-235)||(18551801-18551918)
chr3 (117-178)||(42354337-42354398)
chr3 (119-178)||(18883347-18883406)
chr3 (138-178)||(54736137-54736177)
chr3 (84-183)||(26822181-26822280)
chr3 (117-178)||(9154939-9155000)
chr3 (117-178)||(9158120-9158181)
[»] chr8 (8 HSPs)
chr8 (34-226)||(39659835-39660026)
chr8 (34-226)||(13332138-13332329)
chr8 (34-235)||(5828076-5828279)
chr8 (34-235)||(9467120-9467316)
chr8 (117-178)||(31986407-31986468)
chr8 (138-226)||(14627499-14627586)
chr8 (117-178)||(31981480-31981541)
chr8 (139-178)||(30645627-30645666)
[»] scaffold0273 (1 HSPs)
scaffold0273 (34-226)||(19632-19825)
[»] scaffold0007 (1 HSPs)
scaffold0007 (34-225)||(92482-92673)
[»] scaffold0043 (3 HSPs)
scaffold0043 (34-235)||(13641-13844)
scaffold0043 (106-235)||(11370-11501)
scaffold0043 (34-109)||(5646-5720)
[»] scaffold0401 (1 HSPs)
scaffold0401 (34-235)||(4308-4511)
[»] scaffold0083 (2 HSPs)
scaffold0083 (61-235)||(42677-42853)
scaffold0083 (34-118)||(53168-53252)
[»] scaffold0045 (1 HSPs)
scaffold0045 (114-235)||(90410-90533)
[»] scaffold0014 (2 HSPs)
scaffold0014 (117-178)||(223839-223900)
scaffold0014 (117-178)||(228765-228826)
[»] scaffold0214 (3 HSPs)
scaffold0214 (117-178)||(20187-20248)
scaffold0214 (119-178)||(13739-13798)
scaffold0214 (119-178)||(27755-27814)
[»] scaffold0068 (1 HSPs)
scaffold0068 (138-178)||(33899-33939)
[»] scaffold0002 (1 HSPs)
scaffold0002 (88-226)||(468344-468483)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 6964336 - 6964538
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6964336 gattgatcaaaaccacttagttattttgtcgtaaagctaggttaatttctttgagagagaagagaggcaaattactcactgtgagcaatagaggattcga 6964435  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggcaaccgataaa 232  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| |||||    
T  6964436 aaggcttgatcatctgttttaatccaattatcaaaccattttatttactttgtattaagttttatgcgaccaaatccaactacctagggcaacccataaa 6964535  T
Q  233 ttt 235  Q
    |||    
T  6964536 ttt 6964538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 38431442 - 38431644
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||| |    
T  38431442 gattgatcaaaaccacttagttaatttgtcgtaaagctaggttaatttctttgagagagaagagaggaaaattacccactgtgagcaatagaggattcga 38431541  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggcaaccgataaa 232  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||    
T  38431542 aaggcttgatcatctgttttaatctaattatcaaaccattttatttactttatattaagttttatgcaaccaaatccaactgcctagggcaacccataaa 38431641  T
Q  233 ttt 235  Q
    |||    
T  38431642 ttt 38431644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 34 - 234
Target Start/End: Complemental strand, 3541237 - 3541036
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||| ||| ||  |||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||| |    
T  3541237 gattgatcaaaaccacttggttaatccgtcgtaaagctaggttaatttctttgagagagaagagaggcaaattactcacaatgagcaatagaggattcga 3541138  T
Q  134 aaggttgatcatctgttttaatccaattatcaaaccattttatttacattg-tattaagtttt--atgcaaccaaatccaactgcctagggcaaccgata 230  Q
    ||| |||||||||| ||||||||||||||||||||||||||||||   ||| |||| | ||||   ||||||||||||||||||| |||||||||| |||    
T  3541137 aagcttgatcatctattttaatccaattatcaaaccattttattt--tttgttatttactttttattgcaaccaaatccaactgcttagggcaacccata 3541040  T
Q  231 aatt 234  Q
    ||||    
T  3541039 aatt 3541036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 44017861 - 44017716
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  ||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |    
T  44017861 gattgatcaaaaccacttagttaatccgtcgtcaagctaggttaatttctttgagagagaagagaggcaaattactcacagtgagcaatagagaattcga 44017762  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  44017761 aaggcttgatcatctgttttaatccaattatcaaaccattttattt 44017716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 26153200 - 26153345
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||| ||||||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  26153200 gattaatcaaaaccacttagttaatccgtcgtaaagctaggttaatttctttgagagagaagagaggcaaattactcacggtgagcaatagagaattcaa 26153299  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||||    
T  26153300 aaggcttgatcatctgttttaatctaattttcaaaccattttattt 26153345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 16547052 - 16547255
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    ||||||||||||| |||||||| ||  |||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||||| |    
T  16547052 gattgatcaaaactacttagttaatccgtcgtaaagctaggttaatttctttgtgagagaagagaggcaaattcctcacagtgagcaatagaggattcga 16547151  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaactgcctagggcaaccgataa 231  Q
    |||| |||||||| | ||||| ||||||| |||||||||||| ||  |  |   |||  ||||| ||||||||||||||||||||||||||||||  |||    
T  16547152 aaggcttgatcattttttttagtccaattgtcaaaccattttgttctctgttatttactttttattgcaaccaaatccaactgcctagggcaacccttaa 16547251  T
Q  232 attt 235  Q
    ||||    
T  16547252 attt 16547255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 235
Target Start/End: Complemental strand, 16618610 - 16618407
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    ||||||||||||| |||||||| ||  |||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||||| |    
T  16618610 gattgatcaaaactacttagttaatccgtcgtaaagctaggttaatttctttgtgagagaagagaggcaaattcctcacagtgagcaatagaggattcga 16618511  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaactgcctagggcaaccgataa 231  Q
    |||| |||||||| | ||||| ||||||| |||||||||||| ||  |  |   |||  ||||| ||||||||||||||||||||||||||||||  |||    
T  16618510 aaggcttgatcattttttttagtccaattgtcaaaccattttgttctctgttatttactttttattgcaaccaaatccaactgcctagggcaacccttaa 16618411  T
Q  232 attt 235  Q
    ||||    
T  16618410 attt 16618407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 17152097 - 17152207
Alignment:
Q  126 ggattcaaaagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttat-gcaaccaaatccaactgcctagggca 223  Q
    |||||| ||||| |||||||||| ||||||| |||||||||| |||||||||||    |   |||  |||||| ||||||||||||||||||||||||||    
T  17152097 ggattcgaaaggcttgatcatctattttaattcaattatcaa-ccattttattttttgttatttactttttattgcaaccaaatccaactgcctagggca 17152195  T
Q  224 accgataaattt 235  Q
    ||| ||||||||    
T  17152196 acccataaattt 17152207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 43549279 - 43549319
Alignment:
Q  138 ttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  43549279 ttgatcatttgttttaatccaattataaaaccattttattt 43549319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 8257656 - 8257621
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaag 69  Q
    |||||||||||||||||||||| |||||||||||||    
T  8257656 gattgatcaaaaccacttagttaatttgtcgtaaag 8257621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 8258021 - 8258079
Alignment:
Q  119 caatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||   | || ||||||||||||| ||||||||||||||||||||||||    
T  8258021 caatagaggattcactggctttatcatctgtttta-tccaattatcaaaccattttattt 8258079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 38316116 - 38315923
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||| ||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38316116 gattgatcaataccacttagttaatttgtcgtaaagctaagttaatttctttgagagagaagagaggcaaattactcactgtgagcaatagaggattcga 38316017  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggcaacc 226  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  38316016 aaggcttgatcatctgttttaatccaattatcaaaccattttatttactttgtattaagttttatgcaaccaaatccaactgcctaggacaacc 38315923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 40677841 - 40677696
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  ||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |    
T  40677841 gattgatcaaaaccacttagttaatccgtcgtcaagctaggttaatttctttgagagagaagagaggcaaattactcacagtgagcaatagagaattcga 40677742  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||    
T  40677741 aaggcttgatcatctgttttgatccaattatcaaaccattttattt 40677696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 1506624 - 1506563
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||   | ||||||||||||||||||||||| |||||||||||||||||    
T  1506624 agcaatagaggattcactggcttgatcatctgttttaatccaatcatcaaaccattttattt 1506563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 1503420 - 1503359
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||   | |||||||||||||||||| |||| |||||||||||||||||    
T  1503420 agcaatagaggattcactggtttgatcatctgttttaattcaatcatcaaaccattttattt 1503359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 4577956 - 4578017
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||   | || ||||||||||||||| ||||||||||||||||||||||    
T  4577956 agcaatagaggattcacgggcttaatcatctgttttaattcaattatcaaaccattttattt 4578017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 40139235 - 40139304
Alignment:
Q  101 caaattactcactgtgagcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaacca 170  Q
    ||||||| |||| |||||||||||||||||| || | |||||||| |||||||||  |||| ||||||||    
T  40139235 caaattattcacagtgagcaatagaggattcgaaggcttgatcatttgttttaatataattttcaaacca 40139304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 34 - 235
Target Start/End: Complemental strand, 2500077 - 2499875
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| |||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |    
T  2500077 gattgatcaaaaccacttagttaatttgtcgtagacctaggttaatttctttgagagagaagagaggcaaattactcactgtgagcaatagaggatttga 2499978  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggcaaccgataaa 232  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  2499977 aaggcttgatcatctattttaatccaattatcaaaccattttatttactttgtattaagttttatgcaaccaaatccaactgcttagggcaacccataaa 2499878  T
Q  233 ttt 235  Q
    |||    
T  2499877 ttt 2499875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 26338032 - 26338235
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  |||||||| |||||||| |||| |||||||| |||||||||||||||||||| |||||||||||||||||| |    
T  26338032 gattgatcaaaaccacttagttaatccgtcgtaaacctaggttattttctttgagagataagagaggcaaattactcacagtgagcaatagaggattcga 26338131  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaactgcctagggcaaccgataa 231  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |  |   |||  ||||| |||||||||||||||||||||||||||||| ||||    
T  26338132 aaggcttgatcatctgttttaatccaattatcaaaccattttattttctgttatttactttttattgcaaccaaatccaactgcctagggcaacccataa 26338231  T
Q  232 attt 235  Q
    ||||    
T  26338232 attt 26338235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 9690812 - 9691014
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  ||||||| |||||||||||||  ||||||||||||| ||||||||||||||| |||||||||||||||||| |    
T  9690812 gattgatcaaaaccacttagttaatccgtcgtaa-gctaggttaatttatttgagagagaagaaaggcaaattactcacagtgagcaatagaggattcga 9690910  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaactgcctagggcaaccgataa 231  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |  |   |||  ||||| ||||| || ||| ||||||||||||||||| ||||    
T  9690911 aaggcttgatcatctgttttaatccaattatcaaaccattttattttctgttatttactttttattgcaatcagatcaaactgcctagggcaacccataa 9691010  T
Q  232 attt 235  Q
    ||||    
T  9691011 attt 9691014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 34 - 235
Target Start/End: Complemental strand, 33320993 - 33320791
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||| |    
T  33320993 gattgatcaaaaccacttagttaatccgtcgtaaagctaggttaatttctttgagagagaagagaggcaaattactcacaatgagcaatagaggattcga 33320894  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaactgcctagggcaaccgataa 231  Q
    |||| ||||| ||  ||||||||||||||||||||||||||||||| | |  |||| | ||||| ||||||||||||||  |||||||||  ||| ||||    
T  33320893 aaggcttgataattagttttaatccaattatcaaaccattttattttc-tgttatttacttttattgcaaccaaatccagttgcctagggtgacccataa 33320795  T
Q  232 attt 235  Q
    ||||    
T  33320794 attt 33320791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 33921150 - 33921295
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||||||||  |    
T  33921150 gattgatcaaaaccacttagttaatccgtcgtaaagctaggttaatttcttttagagagaagagagacaaattactcacagtgagcaatagaggatttga 33921249  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||    
T  33921250 aaggtttgatcatctgttttaatctaattatcaaaccattttattt 33921295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 36330820 - 36330961
Alignment:
Q  84 ttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttatttacatt 183  Q
    ||||||||||||||  |||||||| |||| ||| |||| ||||||||| |||| ||| ||||||||||||||| |||| |||||||| |||| ||||  |    
T  36330820 ttgagagagaagaggagcaaattattcacagtgcgcaacagaggattcgaaagtttgttcatctgttttaatctaattttcaaaccaatttaattaccgt 36330919  T
Q  184 gtattaagttttatgcaaccaaatccaactgcctagggcaacc 226  Q
    ||| ||||||| ||||||||  |||||||||||||| ||||||    
T  36330920 gtaataagtttaatgcaacc-gatccaactgcctagtgcaacc 36330961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 235
Target Start/End: Complemental strand, 35432496 - 35432351
Alignment:
Q  100 gcaaattactcactgtgagcaatagaggattcaaaagg-ttgatcatctgttttaatccaattatcaaaccattttatttac---------attgtatta 189  Q
    |||||||| |||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||          || | |||    
T  35432496 gcaaattattcacggtgagcaatagatgattcgaaaggcttgatcatctgttttaatccaattatcaaactattttatttacttttttttttttttttta 35432397  T
Q  190 agttttatgcaaccaaatccaactgcctagggcaaccgataaattt 235  Q
    ||||||||  |||||||||||| |||||||||||||| ||||||||    
T  35432396 agttttataaaaccaaatccaattgcctagggcaacccataaattt 35432351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 2453417 - 2453475
Alignment:
Q  120 aatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||||||||||||  || |||||||||||||||||||||||||||||||||||||||||    
T  2453417 aatagaggattcactagcttgatcatctgttttaatccaattatcaaaccattttattt 2453475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 19689686 - 19689745
Alignment:
Q  119 caatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||    
T  19689686 caatagaggattcactggcttgatcatctgttttaatccaattatcaaaccattttattt 19689745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 19686322 - 19686362
Alignment:
Q  138 ttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19686322 ttgatcatctgttttaatccaattatcaaaccattttattt 19686362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 21680512 - 21680552
Alignment:
Q  138 ttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  21680512 ttgatcatttgttttaatccaattataaaaccattttattt 21680552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 36335092 - 36334994
Alignment:
Q  124 gaggattcaaaaggttgatcatctgtttt-aatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggc 222  Q
    |||||||| || | ||||||||||||||| |||| |||| |||||||| |||| ||||  |||  |||||||||||||||| ||||||||| | ||||||    
T  36335092 gaggattcgaaggcttgatcatctgtttttaatctaattttcaaaccaatttaattactgtgttataagttttatgcaacc-aatccaactacttagggc 36334994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 34552753 - 34552561
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| |    
T  34552753 gattgatcaaaaccacttagttaatttgtcgtaaagctaggttaatttctttaagagagaagagaggcaaattactcacggtgagcaatagaggattcga 34552654  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggcaacc 226  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||| |||| ||| |||||||  |||||||||||||||||||||||||||    
T  34552653 aaggcttgatcatctgctttaatccaattatcaaaccattttatttactttgt-ttacgttttataaaaccaaatccaactgcctagggcaacc 34552561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 6205930 - 6206122
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  6205930 gattgatcaaaatcacttagttaatttgtcgtaaagctaggttaatttctttgagagagaagagagccaaattactcacggtgagcaatagaggattcaa 6206029  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggcaacc 226  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||  ||||||||| |||| ||||||||||||    
T  6206030 aaggcttgatcatctgttttaatccaattatcaaaccattttatttactttgt-ttacgttttataaaaccaaatcgaactacctagggcaacc 6206122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 18392441 - 18392633
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||||||||||||| |    
T  18392441 gattgatcaaaaccacttagttaatttgtcgtaaagctaggttaatttctttgagagagaagataggcaaattactcatggtgagcaatagaggattcga 18392540  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggcaacc 226  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||  ||||||||||||||| |||||||||||    
T  18392541 aaggcttgatcatctgttttaatccaattatcaaaccattttatttactttgt-ttacgttttataaaaccaaatccaactggctagggcaacc 18392633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 33898375 - 33898565
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  33898375 gattgatcaaaaccacttagttaatccgtcgtaaagctaggttaatttc-ttgagagagaagagaggcaaattactcacagtgagcaatagaggattcga 33898473  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaactgcctagggcaa 224  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| | |  |||||  ||||| ||||| ||||||||||||||||||||||    
T  33898474 aaggattgatcatctgttttaatccaattatcaaaccattttattttc-tattattactttttattgcaagcaaatccaactgcctagggcaa 33898565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 23441353 - 23441208
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  ||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |    
T  23441353 gattgatcaaaaccacttagttaatccgtcgtcaagctaggttaatttctttgagagagaagagaggcaaattactcacagtgagcaatagagaattcga 23441254  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||    
T  23441253 aaggcttgatcatctgttttgatccaattatcaaaccattttattt 23441208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 50197028 - 50196883
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    ||||||||||||||| |||||| ||  |||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||| |||  |    
T  50197028 gattgatcaaaaccatttagttaatccgtcgtaaagctaggttaatttctttgagagagaagagaggcaaattactcacattgagcaatagagtatttga 50196929  T
Q  134 aag-gttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||  |||||||||||||||||||||||||||||||||||||||||    
T  50196928 aagtcttgatcatctgttttaatccaattatcaaaccattttattt 50196883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 185
Target Start/End: Complemental strand, 3087794 - 3087660
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||              
T  3087794 gattgatcaaaaccacttagttaatccgtcgtaaagctaggttaatttctttgagagagaagagagccaaattactcacagtgagcaata---------- 3087705  T
Q  134 aaggttgatcatctgttttaatccaattatcaaaccattttatttacattgt 185  Q
           |||||||||||||||||||||||||||||||||||||||| ||||    
T  3087704 -------atcatctgttttaatccaattatcaaaccattttatttactttgt 3087660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 15851222 - 15851414
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  15851222 gattgatcaaaaccacttagttaatttgtcgtaaagctaggttaatttctttgagagagaagagagccaaattactcacggagagcaatagaggattcaa 15851321  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggcaacc 226  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||||||  ||||||||||||| |||||||||||||    
T  15851322 aaggcttgatcatctgttttaacccaattatcaaaccattttatttactttgt-ttacgttttataaaaccaaatccaacagcctagggcaacc 15851414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 34 - 215
Target Start/End: Complemental strand, 26703560 - 26703380
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||  |||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  26703560 gattgatcaaaaccacttagttaatccgtcgtaaagctaggttaatttatttgagagagaagagagccaaattactcacagtgagcaatagaggattcaa 26703461  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgc 215  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | ||||||||||||||||    
T  26703460 aaggcttgatcatctgttttaatccaattatcaaaccattttatttactttgt-ttaagttttacg-aaccaaatccaactgc 26703380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 13979183 - 13979385
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |    
T  13979183 gattgatcaaaaccacttagttaatccgtcgtaaagctaggttaatttc-ttgagagagaagagaggcaaattactcacagtgaacaatagaggattcga 13979281  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaactgcctagggcaaccgataa 231  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |  |   |||  ||||| ||||||||||||||||||||||||| |||| ||||    
T  13979282 aaggcttgatcatctgttttaatccaattatcaaaccattttattttctgttatttactttttattgcaaccaaatccaactgcctagggtaacccataa 13979381  T
Q  232 attt 235  Q
    ||||    
T  13979382 attt 13979385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 19928929 - 19929075
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  ||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  19928929 gattgatcaaaaccacttagttaatccgtcgtaaagttaggttaatttctttgagagagaagagaggcaaattactcacagtgagcaatagaggattcga 19929028  T
Q  134 aagg-ttgatcatctgtttt-aatccaattatcaaaccattttattt 178  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  19929029 aaggcttgatcatctgttttaaatccaattatcaaaccattttattt 19929075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 21217610 - 21217450
Alignment:
Q  61 gtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaaaaggttgatcatctgttttaatccaat 160  Q
    |||||||| |||||||||   | ||||||||||||| |  ||||||| |||| ||| |||||||||||||  || | ||||| ||||||||||||| |||    
T  21217610 gtcgtaaaactaggttaa---cattgagagagaagaaaatcaaattattcacagtgcgcaatagaggatttgaaggattgattatctgttttaatctaat 21217514  T
Q  161 tatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggcaac 225  Q
    | |||||||| ||||||||||||||  ||||| ||||  ||||||| ||||||||||||||||||    
T  21217513 tttcaaaccaatttatttacattgttataagtgttatcgaaccaaa-ccaactgcctagggcaac 21217450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 37176799 - 37176889
Alignment:
Q  146 ctgttttaatccaattatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaactgcctagggcaaccgataaattt 235  Q
    ||||||||||||||||||||||||||||||||| |  |   |||  ||||| |||||||||||||||||| ||||||||||| ||||||||    
T  37176799 ctgttttaatccaattatcaaaccattttattttctgttatttactttttattgcaaccaaatccaactgtctagggcaacccataaattt 37176889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 10386065 - 10386126
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||   | |||||||||||||||||| ||||||||||||||||||||||    
T  10386065 agcaatagaggattcactggcttgatcatctgttttaattcaattatcaaaccattttattt 10386126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 33400350 - 33400289
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||  |  ||||||||||| |||||||||||||||||||||||||||||    
T  33400350 agcaatagaggattcaccaacttgatcatctgctttaatccaattatcaaaccattttattt 33400289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 10247968 - 10248007
Alignment:
Q  139 tgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10247968 tgatcatctgttttaatccaattatcaaaccattttattt 10248007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 37176748 - 37176794
Alignment:
Q  65 taaagctaggttaatttcgttgagagagaagagaggcaaattactca 111  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||    
T  37176748 taaagttaggttaatttctttgagagagaagagaggcaaattactca 37176794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 11702574 - 11702513
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||||    
T  11702574 agcaatagaggattcactgacttgatcatctgttttaatccaatcatcaaaccattttattt 11702513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 33400285 - 33400245
Alignment:
Q  138 ttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  33400285 ttgatcatctgctttaatccaattatcaaacgattttattt 33400245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 34 - 235
Target Start/End: Complemental strand, 35027202 - 35027000
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||| |    
T  35027202 gattgatcaaaaccacttagttaatctgtcgtaaagctaggttaatttctttgagagagaagagaggcaaattactcatagtgagcaatagaggattcga 35027103  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaactgcctagggcaaccgataa 231  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |  | |||||  ||||| |||||||||||||||||||||||||||||| ||||    
T  35027102 aaggcttgatcatctgttttaatccaattatcaaaccattttattttccgt-tattactttttattgcaaccaaatccaactgcctagggcaacccataa 35027004  T
Q  232 attt 235  Q
    ||||    
T  35027003 attt 35027000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 34 - 235
Target Start/End: Complemental strand, 15578984 - 15578784
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  |||| ||||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||||||| |    
T  15578984 gattgatcaaaaccacttagttaatccgtcgaaaagctaggttaacttctttgagagagaagagagccaaattactcacagtaagcaatagaggattcga 15578885  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggcaaccgataaa 232  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| |||||    
T  15578884 aaggcttgatcatctgttttaatccaattatcaaacc-ttttatttactttgt-ttaagttttatgcaaccgaatccaactgcctagggcaacccataaa 15578787  T
Q  233 ttt 235  Q
    |||    
T  15578786 ttt 15578784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 34 - 235
Target Start/End: Complemental strand, 33679258 - 33679056
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  ||||||||||||| |||||||| |||||||||||||||| |||||||||||| |||||||||| || |||| |    
T  33679258 gattgatcaaaaccacttagttaatccgtcgtaaagctagattaatttctttgagagagaagagagccaaattactcacagtgagcaataaagaattcga 33679159  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactg-cctagggcaaccgataa 231  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||  ||||||||||||||| |||||||||||| ||||    
T  33679158 aaggcttgatcatctgttttaatccaattatcaacccattttatttactttgt-ttaagttttataaaaccaaatccaactgtcctagggcaacccataa 33679060  T
Q  232 attt 235  Q
    ||||    
T  33679059 attt 33679056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 12746858 - 12747061
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||  |    
T  12746858 gattgatcaaaaccacttagttaatccgtcgtaaagctaggttaatttctttgagagagaagagaggcaaattactcacaatgagcaatagaggatttga 12746957  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttt--atgcaaccaaatccaactgcctagggcaaccgata 230  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| | |  |||| | ||||   |||||||||||||||||||||||||||||| |||    
T  12746958 aaggcttgatcatctgttttaatccaattatcaaaccattttattttc-tgttattcactttttattgcaaccaaatccaactgcctagggcaacccata 12747056  T
Q  231 aattt 235  Q
    |||||    
T  12747057 aattt 12747061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 34 - 235
Target Start/End: Complemental strand, 28894550 - 28894347
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||| ||||| ||    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  28894550 gattgatcaaaaccacatagttaatccaccgtaaagctaggttaatttctttgagagagaagagaggcaaattactcacagtgagcaatagagaattcaa 28894451  T
Q  134 aa-ggttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaactgcctagggcaaccgataa 231  Q
    || | ||||||||||||||||||||||||||||||||||||||||| |  |   |||  ||||| |||||||||||| ||||||||||||||||| ||||    
T  28894450 aatgcttgatcatctgttttaatccaattatcaaaccattttattttctgttatttactttttattgcaaccaaatctaactgcctagggcaacccataa 28894351  T
Q  232 attt 235  Q
    ||||    
T  28894350 attt 28894347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 34502476 - 34502535
Alignment:
Q  119 caatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||  || |||||||| ||||||||||||||||||||||||||||||||    
T  34502476 caatagaggattcactagcttgatcatatgttttaatccaattatcaaaccattttattt 34502535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 5618204 - 5618143
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||| |||||||||    
T  5618204 agcaatagaggattcactggcttgatcatctgttttaatccaattatcaaactattttattt 5618143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 27054921 - 27055113
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| |    
T  27054921 gattgatcaaaaccacttagttaatttgtcgtaaagctaggttaatttctttgagagagaagagagccaaattactcacggtgagcaatagaggattcga 27055020  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggcaacc 226  Q
    |||| ||||||||||||||||||||||||||||||| |||||||| || |||| ||| |||||||  || ||||||||||||||||||||||||    
T  27055021 aaggcttgatcatctgttttaatccaattatcaaactattttattgactttgt-ttacgttttataaaatcaaatccaactgcctagggcaacc 27055113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 28327493 - 28327638
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  ||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |    
T  28327493 gattgatcaaaaccacttagttaatccgtcgtcaagctaggttaatttctttgagagagaagagaggcaaattactcacagtgagcaatagagaattcga 28327592  T
Q  134 aag-gttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||  |||||||||||||||||||||||||||||||||||||||||    
T  28327593 aagacttgatcatctgttttaatccaattatcaaaccattttattt 28327638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 28330818 - 28330963
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  ||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |    
T  28330818 gattgatcaaaaccacttagttaatccgtcgtcaagctaggttaatttctttgagagagaagagaggcaaattactcacagtgagcaatagagaattcga 28330917  T
Q  134 aag-gttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||  |||||||||||||||||||||||||||||||||||||||||    
T  28330918 aagacttgatcatctgttttaatccaattatcaaaccattttattt 28330963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 3305899 - 3306043
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  ||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |    
T  3305899 gattgatcaaaaccacttagttaatccgtcgtcaagctaggttaatttccttgagagagaagagaggcaaattactcacagtgagcaatagagaattcga 3305998  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||    
T  3305999 aaggcttgatcatctg-tttaatccaattatcaaaccattttattt 3306043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 4250435 - 4250580
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagagga-ttca 132  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||| ||||||||| |||||||||||||| |||| ||||||||||||||| || |    
T  4250435 gattgatcaaaaccacttagttaatccgtcgtaaagctaggttaatttctttgagagaggagagaggcaaattaatcacagtgagcaatagaggatttga 4250534  T
Q  133 aaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||  |||||||||||||||||||||||||||||||||||||||||    
T  4250535 aaatcttgatcatctgttttaatccaattatcaaaccattttattt 4250580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 18551801 - 18551918
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcc 216  Q
    ||||||||||||||||   | |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  18551801 agcaatagaggattcaccggcttgatcatttgttttaatccaattatcaaaccattttatttactttgt-ttaagttttatgcaaccaaatctaactgcc 18551899  T
Q  217 tagggcaaccgataaattt 235  Q
    ||| |||||| ||||||||    
T  18551900 tagagcaacccataaattt 18551918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 42354398 - 42354337
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||   | ||||||||||||||||||||||| |||||||||||||||||    
T  42354398 agcaatagaggattcactggcttgatcatctgttttaatccaatcatcaaaccattttattt 42354337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 18883347 - 18883406
Alignment:
Q  119 caatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||   | |||||||| ||||||||||||||||||||||||||||||||    
T  18883347 caatagaggattcactggcttgatcatgtgttttaatccaattatcaaaccattttattt 18883406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 54736177 - 54736137
Alignment:
Q  138 ttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  54736177 ttgatcatctgttttaatccaattatcaaatcattttattt 54736137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 183
Target Start/End: Complemental strand, 26822280 - 26822181
Alignment:
Q  84 ttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttatttacatt 183  Q
    |||||| |||||||  |||||||| |||| ||| |||||||| ||||  || | |||||||| | |||||||| |||| |||||||| ||||||||||||    
T  26822280 ttgagaaagaagaggagcaaattattcacagtgtgcaatagatgatttgaaggcttgatcatttattttaatctaattctcaaaccaatttatttacatt 26822181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 9154939 - 9155000
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||     |||||||||||||||||||| |||||||||| |||||||||    
T  9154939 agcaatagaggattcactgacttgatcatctgttttaatcccattatcaaactattttattt 9155000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 9158120 - 9158181
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||     |||||||||||||||||||  ||||||||||||||||||||    
T  9158120 agcaatagaggattcactgacttgatcatctgttttaatctcattatcaaaccattttattt 9158181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 39660026 - 39659835
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| |    
T  39660026 gattgatcaaaaccactaagta-atttgtcgtaaagctaggttaatttctttgagagagaagagagccaaattactcacggtgagcaatagaggattcga 39659928  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggcaacc 226  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||  |||||||||||||||||||||||||||    
T  39659927 aaggctagatcatctgttttaatccaattatcaaaccattttatttactttgt-ttacgttttataaaaccaaatccaactgcctagggcaacc 39659835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 13332138 - 13332329
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||   ||||||||||| |||||||||||||||||| |    
T  13332138 gattgatcaaaaccacttagttaatttgtcgtaaagctaggttaattt-tttgagagagaagagaacaaaattactcacggtgagcaatagaggattcga 13332236  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggcaacc 226  Q
    |||| |||||||| ||||||||| |||||||||||||||||||||||| |||| ||| |||||||  || ||||||||||||||||||||||||    
T  13332237 aaggcttgatcatatgttttaattcaattatcaaaccattttatttactttgt-ttacgttttataaaatcaaatccaactgcctagggcaacc 13332329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 5828076 - 5828279
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||   | ||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||| |    
T  5828076 gattgatcaaaaccacttagttaatcctttgtaaagctaggttaatttctttgagagagaagagaggcaaattactcacactgagcaatagaggattcga 5828175  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaactgcctagggcaaccgataa 231  Q
    |||| ||||| || |||||||||||||||||||||||||||||||| |  |   |||  ||||| |||||||||||||||||||||||||||||| ||||    
T  5828176 aaggcttgatgatatgttttaatccaattatcaaaccattttattttctgttatttactttttattgcaaccaaatccaactgcctagggcaacccataa 5828275  T
Q  232 attt 235  Q
    ||||    
T  5828276 attt 5828279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 9467120 - 9467316
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||| || | ||| ||||||| |||||||||||  ||||||||||||||| || |    
T  9467120 gattgatcaaaaacacttagttaatttgtcgtaaagctaggttaatttctttaaaagataagagagccaaattactcagagtgagcaatagaggactcga 9467219  T
Q  134 aag-gttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggcaaccgataaa 232  Q
    |||  ||||||||||||||||||||  ||||||||||||||||||||| ||||||||       |||| |||||||||||||||||||||||  ||||||    
T  9467220 aagtcttgatcatctgttttaatccctttatcaaaccattttatttactttgtatta------ctgcatccaaatccaactgcctagggcaattgataaa 9467313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 31986407 - 31986468
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||    
T  31986407 agcaatagaggattcactggcttgatcatctgttttaatccaattatcaaaccattttattt 31986468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 14627499 - 14627586
Alignment:
Q  138 ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagttttatgcaaccaaatccaactgcctagggcaacc 226  Q
    ||||||||||||||||||| |||| | |||||| |||||||||||| |  |||||||  |||||||||| |||||||||||||||||||    
T  14627499 ttgatcatctgttttaatctaatttttaaaccaatttatttacattattataagtttattgcaaccaaa-ccaactgcctagggcaacc 14627586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 31981480 - 31981541
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||   | |||||||||||||||||||||||||||||||| ||||||||    
T  31981480 agcaatagaggattcattggcttgatcatctgttttaatccaattatcaaaccgttttattt 31981541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 30645627 - 30645666
Alignment:
Q  139 tgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30645627 tgatcatctgttttaatccaattatcaaaccattttattt 30645666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 19825 - 19632
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| |    
T  19825 gattgatcaaaaccacttagttaattcttcgtaaagctaggttaatttctttgagagagaagagaggcaaattactcattgtgagcaatagagtattcga 19726  T
Q  134 aag-gttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaactgcctagggcaacc 226  Q
    |||  ||||||||||||||||||||||||||||||||||||||||| | |  |||||  ||||| ||||||||||||||||||||||||||||||    
T  19725 aagtcttgatcatctgttttaatccaattatcaaaccattttattttc-tgttattactttttattgcaaccaaatccaactgcctagggcaacc 19632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 34 - 225
Target Start/End: Original strand, 92482 - 92673
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |    
T  92482 gattgatcaaaaccacttagttaatccgtcgtaaagctaggttaatttc-ttgagagagaagagaggcaaattactcacagtgaacaatagaggattcga 92580  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaactgcctagggcaac 225  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| | |  | |||  ||||| |||||||||||||||||||||||||||||    
T  92581 aaggcttgatcatctgttttaatccaattatcaaaccattttattttc-tgttcttactttttattgcaaccaaatccaactgcctagggcaac 92673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 13641 - 13844
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||      
T  13641 gattgatcaaaaccacttagttaatccgtcgtaaagctaggttaatttctttgagagagaagagaggcaaattactcatagtgagcaatagaggattcgg 13740  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaactgcctagggcaaccgataa 231  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |  |   |||  ||||| |  ||||||||||||||||||||||||||| || |    
T  13741 aaggcttgatcatctgttttaatccaattatcaaaccattttattttctgttatttactttttattttaaccaaatccaactgcctagggcaacccatca 13840  T
Q  232 attt 235  Q
    ||||    
T  13841 attt 13844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 11370 - 11501
Alignment:
Q  106 tactcactgtgagcaatagaggattcaaaagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagt-ttta-tgcaac 202  Q
    ||||||| ||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| | |  |||| | | |||| ||||||    
T  11370 tactcacagtgagcaatagaggattcagaaggcttgatcatatgttttaatccaattatcaaaccattttattttc-tgttatttactatttattgcaac 11468  T
Q  203 caaatccaactgcctagggcaaccgataaattt 235  Q
    ||||||||||||||||||| |||| ||||||||    
T  11469 caaatccaactgcctagggaaacccataaattt 11501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 5646 - 5720
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattact 109  Q
    |||||||||||||||||||||| ||  |||||||||||||| ||||||| ||||||||||||| ||||||| ||||    
T  5646 gattgatcaaaaccacttagttaatccgtcgtaaagctagg-taatttctttgagagagaagacaggcaaactact 5720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 4308 - 4511
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaa 133  Q
    |||||||||||||||||||||| ||  ||| |||||||||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||| |    
T  4308 gattgatcaaaaccacttagttaatccgtcataaagctaggttaatttctttgagagagaagacaggcaaattacttacagtgagcaatagaggattcga 4407  T
Q  134 aagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttt--atgcaaccaaatccaactgcctagggcaaccgata 230  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  ||  |||| | ||||   ||||||||||||||| | |||||||||||| |||    
T  4408 aaggcttgatcatctgttttaatccaattatcaaaccattttattt-tatgttatttactttttattgcaaccaaatccaatttcctagggcaacccata 4506  T
Q  231 aattt 235  Q
    |||||    
T  4507 aattt 4511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 61 - 235
Target Start/End: Original strand, 42677 - 42853
Alignment:
Q  61 gtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgagcaatagaggattcaaaagg-ttgatcatctgttttaatccaa 159  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  42677 gtcgtaaagctaggttaatttcttttagagagaagagaggcaaattactcacagtgagcaatagaggattcgaaaggcttgatcatctgttttaatccaa 42776  T
Q  160 ttatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaactgcctagggcaaccgataaattt 235  Q
    ||||||||||||||||||| |  |   |||  ||||| ||||||||||||||| ||||||||| || | ||||||||    
T  42777 ttatcaaaccattttattttctgttatttactttttattgcaaccaaatccaaatgcctagggaaatccataaattt 42853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 53168 - 53252
Alignment:
Q  34 gattgatcaaaaccacttagttgatttgtcgtaaagctaggttaatttcgttgagagagaagagaggcaaattactcactgtgag 118  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  53168 gattgatcaaaaccacttagttaatctgtcgtaaagctaggttaatttctttgagagagaagagaggaaaattactcacagtgag 53252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 90533 - 90410
Alignment:
Q  114 gtgagcaatagaggattcaaaagg-ttgatcatctgttttaatccaattatcaaaccattttatttacattgtattaagtttta-tgcaaccaaatccaa 211  Q
    |||||||||||||||||  ||||| ||||||||||||||||||||||||||||| ||||||||||| |  |   |||  ||||| |||||||||||||||    
T  90533 gtgagcaatagaggatttgaaaggcttgatcatctgttttaatccaattatcaacccattttattttctgttatttactttttattgcaaccaaatccaa 90434  T
Q  212 ctgcctagggcaaccgataaattt 235  Q
     |||||||||||||| ||||||||    
T  90433 ttgcctagggcaacccataaattt 90410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 223839 - 223900
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||    
T  223839 agcaatagaggattcattggcttgatcatctgttttaatccaattatcaaaccattttattt 223900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 228765 - 228826
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||    
T  228765 agcaatagaggattcactggcttgatcatctgttttaatccaattatcaaaccattttattt 228826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 20187 - 20248
Alignment:
Q  117 agcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||||||||||||||||  | || ||||||||||||||| ||||||||||||||||||||||    
T  20187 agcaatagaggattcaatggcttaatcatctgttttaattcaattatcaaaccattttattt 20248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 13739 - 13798
Alignment:
Q  119 caatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||   | || ||||||||||||||| ||||||||||||||||||||||    
T  13739 caatagaggattcactggcttaatcatctgttttaattcaattatcaaaccattttattt 13798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 27755 - 27814
Alignment:
Q  119 caatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    ||||||||||||||   | || ||||||||||||||| ||||||||||||||||||||||    
T  27755 caatagaggattcactggcttaatcatctgttttaattcaattatcaaaccattttattt 27814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 33939 - 33899
Alignment:
Q  138 ttgatcatctgttttaatccaattatcaaaccattttattt 178  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  33939 ttgatcatttgttttaatccaattataaaaccattttattt 33899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 468483 - 468344
Alignment:
Q  88 gagagaagagaggcaaattactcactgtgagcaatagaggattcaaaaggttgatcatctgttttaatccaattatcaaaccattttatttacatt-gta 186  Q
    ||||||||||  |||||||| |||| ||||||||||||  |||| || | |||||||| |||||||||| |||  ||| ||||  ||| || | ||  |     
T  468483 gagagaagaggagcaaattattcacagtgagcaatagacaattcgaaggcttgatcatatgttttaatctaatcttcataccaagttaattgctttattt 468384  T
Q  187 ttaagttttatgcaaccaaatccaactgcctagggcaacc 226  Q
    |||  |||||||||||||||||||||||| ||||| ||||    
T  468383 ttactttttatgcaaccaaatccaactgcttagggtaacc 468344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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