View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6225_low_17 (Length: 243)
Name: NF6225_low_17
Description: NF6225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6225_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 43552478 - 43552247
Alignment:
| Q |
1 |
taatatcaatgttagttatgtatattccaaaatatttcctaaaactatttcacaaaccagaatcagaacgaagaaattctagcatgctatacacactact |
100 |
Q |
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| T |
43552478 |
taatatcaatgttagttatgtatattccaaaatatttcctaaaactatttcacaaaccagaatcagaacgaagaaattctagcatgctatacacactact |
43552379 |
T |
|
| Q |
101 |
ctaaaccactaactgcatatct--tatcgcgatatttaccaaattaattttatcttgtccatttttaagcattcaaaatttgttttaattgaaggcactt |
198 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43552378 |
ctaaaccactaactgcatatcttatatcgcgatatttaccaaattaattttatcttgtccatttttaagcattcaaaatttgttttaattgaaggcactt |
43552279 |
T |
|
| Q |
199 |
cagtttttgaggtattattatcggtgacagta |
230 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
43552278 |
cagtttttgaggtattattatcggtgacagta |
43552247 |
T |
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