View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6225_low_22 (Length: 237)
Name: NF6225_low_22
Description: NF6225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6225_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43552466 - 43552685
Alignment:
| Q |
1 |
aacattgatattaatgtacaagttttttacacatagcacttaatattttcaatttaggagccnnnnnnntaatcaatatgaatggtaaccctgtagataa |
100 |
Q |
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| T |
43552466 |
aacattgatattaatgtacaagttttttacaca--gcacttaatattttcaatttaggagccaaaaaaataatcaatatgaatggtaaccctgtagataa |
43552563 |
T |
|
| Q |
101 |
gagctttgaaaatctgaattttcactttccttatctgattcagcagctccatccccaatttcctttcttttctttctccacttggatttcctaaggctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43552564 |
gagctttgaaaatctgaattttcactttccttatctgattcagcagctccatccccaatttcctttcttttctttctccacttggatttcctaaggctgt |
43552663 |
T |
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| Q |
201 |
gttcaactagcatcacactaag |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
43552664 |
gttcaactagcatcacactaag |
43552685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 43548473 - 43548687
Alignment:
| Q |
8 |
atattaatgtacaagttttttacacatagcacttaatattttcaatttaggagccnnnnnnntaatcaatatgaatggtaaccctgtagataagagcttt |
107 |
Q |
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|||| |||||||||||||| ||||||||| || ||||||||||| |||| ||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
43548473 |
atatgaatgtacaagttttctacacatagaacataatattttcattttaagagccaacaaattaatcaatatgaatgataaccctgtagataagagcttt |
43548572 |
T |
|
| Q |
108 |
gaaaatctgaattttcactttccttatctgattcagcagctccatccccaatttcctttcttttctttctccacttggatttcctaaggctgtgttcaac |
207 |
Q |
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| T |
43548573 |
gaaaatctgaatcttcactttccttatctgattcagcagttccgtctccgctttcctttcttttctttctccaactggatttcctaagccagtgttcaac |
43548672 |
T |
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| Q |
208 |
tagcatcacactaag |
222 |
Q |
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|||||||||||||| |
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| T |
43548673 |
aagcatcacactaag |
43548687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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