View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6225_low_8 (Length: 336)

Name: NF6225_low_8
Description: NF6225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6225_low_8
NF6225_low_8
[»] chr7 (3 HSPs)
chr7 (1-313)||(40077611-40077919)
chr7 (10-101)||(41870514-41870604)
chr7 (3-71)||(5362334-5362402)
[»] chr6 (1 HSPs)
chr6 (3-101)||(10067669-10067766)
[»] chr4 (8 HSPs)
chr4 (3-71)||(17381498-17381566)
chr4 (3-101)||(51150901-51150998)
chr4 (3-71)||(45615732-45615800)
chr4 (15-101)||(51234423-51234508)
chr4 (3-72)||(4161831-4161900)
chr4 (3-68)||(8755912-8755977)
chr4 (3-72)||(38932765-38932834)
chr4 (3-71)||(13834417-13834485)
[»] chr3 (3 HSPs)
chr3 (3-101)||(34979124-34979221)
chr3 (3-68)||(14984499-14984564)
chr3 (1-45)||(54558393-54558437)
[»] chr5 (2 HSPs)
chr5 (16-111)||(3599845-3599940)
chr5 (53-101)||(24444394-24444441)
[»] chr1 (3 HSPs)
chr1 (52-118)||(2262149-2262215)
chr1 (55-101)||(48701717-48701762)
chr1 (3-48)||(8069084-8069129)
[»] scaffold0022 (1 HSPs)
scaffold0022 (51-101)||(82886-82935)
[»] chr2 (2 HSPs)
chr2 (5-71)||(21603501-21603567)
chr2 (3-63)||(15301535-15301595)
[»] chr8 (1 HSPs)
chr8 (3-67)||(21602124-21602188)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 40077611 - 40077919
Alignment:
Q  1 aatatattgaagtattaatataacaatataaacaaaatattttaatatcggagactattttgattaacaaaaatacacaattagatactattttaaaatt 100  Q
    |||||||||||||| |||||||||||||| |||||||||||||||| |  ||||||||||| ||||| |||| || ||||||||||| ||||||||||||    
T  40077611 aatatattgaagtactaatataacaatattaacaaaatattttaatgttagagactattttaattaataaaa-tatacaattagatattattttaaaatt 40077709  T
Q  101 taatacattaaatgactactgattaaacattgagagaccaaaacgactattacctctaaaactaatggtttcaatgtagaaaccgttaaatttgtgaagc 200  Q
    ||||||||| ||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||  |    |  | ||||||||||||||||||||||    
T  40077710 taatacattgaatgactactgattagacattcagataccaaaaagactattacctctaaaactaattat----acattgaaaccgttaaatttgtgaagc 40077805  T
Q  201 tactctaccactaccaagcttccttattatattattctttgttccccacataactcgacgt-gacacaaccaacatattccactcttcctttcctctata 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  40077806 tactctaccactaccaagcttccttattatattattctttgttccccacataactcgacgtcgacacaaccaacgtattccactcttcctttcctctata 40077905  T
Q  300 taaaccgtattcct 313  Q
    ||||||||||||||    
T  40077906 taaaccgtattcct 40077919  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 41870604 - 41870514
Alignment:
Q  10 aagtattaatataacaatataaacaaaatattttaatatcggagactattttgattaacaaaaatacacaattagatactattttaaaattt 101  Q
    ||||||| |||| ||||||| |   ||| |||||||||| ||||||| |||||| |||||||| ||||||||| ||  ||||||||||||||    
T  41870604 aagtattgatatgacaatattagtgaaacattttaatattggagactgttttgactaacaaaa-tacacaatttgagtctattttaaaattt 41870514  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 5362402 - 5362334
Alignment:
Q  3 tatattgaagtattaatataacaatataaacaaaatattttaatatcggagactattttgattaacaaa 71  Q
    |||||||||| | |||||| || |||| ||| || |||||||||||| | ||||||||||| |||||||    
T  5362402 tatattgaaggactaatatgaccatattaacgaagtattttaatatcagggactattttgactaacaaa 5362334  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 10067669 - 10067766
Alignment:
Q  3 tatattgaagtattaatataacaatataaacaaaatattttaatatcggagactattttgattaacaaaaatacacaattagatactattttaaaattt 101  Q
    |||||||||  | |||||| ||||||| |||||| ||||||||| || |||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  10067669 tatattgaatgactaatatgacaatattaacaaagtattttaatgtcagagactattttgattaac-aaaatacacaatcagagactattttaaaattt 10067766  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 17381498 - 17381566
Alignment:
Q  3 tatattgaagtattaatataacaatataaacaaaatattttaatatcggagactattttgattaacaaa 71  Q
    |||||||||| | |||||| ||||||| ||| |||||||||||||||   |||||||||||||||||||    
T  17381498 tatattgaaggactaatatgacaatattaacgaaatattttaatatcaaggactattttgattaacaaa 17381566  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 51150998 - 51150901
Alignment:
Q  3 tatattgaagtattaatataacaatataaacaaaatattttaatatcggagactattttgattaacaaaaatacacaattagatactattttaaaattt 101  Q
    |||||||||||| |||||| ||||||| |||||||||||||||| |  | ||||||||| | |||| ||||| |||||| |   |||||||||||||||    
T  51150998 tatattgaagtactaatatgacaatattaacaaaatattttaatgttagggactattttcactaac-aaaatgcacaatcacgaactattttaaaattt 51150901  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 45615732 - 45615800
Alignment:
Q  3 tatattgaagtattaatataacaatataaacaaaatattttaatatcggagactattttgattaacaaa 71  Q
    |||||||||| | ||| || ||||||| |||||| |||||||||||  ||||||||||||| |||||||    
T  45615732 tatattgaaggactaaaatgacaatattaacaaattattttaatattagagactattttgactaacaaa 45615800  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 51234423 - 51234508
Alignment:
Q  15 ttaatataacaatataaacaaaatattttaatatcggagactattttgattaacaaaaatacacaattagatactattttaaaattt 101  Q
    ||||||| ||||||| || |||| ||||||| ||| ||||||||||||| ||||  |||| || | ||||| |||||||||||||||    
T  51234423 ttaatatgacaatattaataaaacattttaacatcagagactattttgactaac-gaaatgcatagttagagactattttaaaattt 51234508  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 4161831 - 4161900
Alignment:
Q  3 tatattgaagtattaatataacaatataaacaaaatattttaatatcggagactattttgattaacaaaa 72  Q
    |||||||||| | |||||| ||||||| ||  ||| |||||||||||  |||||||||||| ||||||||    
T  4161831 tatattgaagaactaatatgacaatattaatgaaacattttaatatcatagactattttgactaacaaaa 4161900  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 8755912 - 8755977
Alignment:
Q  3 tatattgaagtattaatataacaatataaacaaaatattttaatatcggagactattttgattaac 68  Q
    |||||| ||| |||||||| ||||||| ||| || ||||||||| |  ||||||||||||||||||    
T  8755912 tatattaaaggattaatatgacaatattaacgaagtattttaatgttagagactattttgattaac 8755977  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 38932765 - 38932834
Alignment:
Q  3 tatattgaagtattaatataacaatataaacaaaatattttaatatcggagactattttgattaacaaaa 72  Q
    |||||||||| | |||||| ||||||| ||  |||||||||||| |  ||||||||||||| ||||||||    
T  38932765 tatattgaaggactaatatgacaatattaatgaaatattttaatgttagagactattttgactaacaaaa 38932834  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 13834485 - 13834417
Alignment:
Q  3 tatattgaagtattaatataacaatataaacaaaatattttaatatcggagactattttgattaacaaa 71  Q
    |||||||||| | |||||| ||||||| |||||| ||||||||| |   |||||||||||| |||||||    
T  13834485 tatattgaaggactaatatgacaatattaacaaattattttaatgttaaagactattttgactaacaaa 13834417  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 34979124 - 34979221
Alignment:
Q  3 tatattgaagtattaatataacaatataaacaaaatattttaatatcggagactattttgattaacaaaaatacacaattagatactattttaaaattt 101  Q
    |||||||||  | |||||| | ||||| ||| |||||||||||| |  ||||||||||||| |||| ||||| |||||||| | |||||||||||||||    
T  34979124 tatattgaatgactaatatgataatattaacgaaatattttaatgtgagagactattttgactaac-aaaatgcacaattaaaaactattttaaaattt 34979221  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 14984564 - 14984499
Alignment:
Q  3 tatattgaagtattaatataacaatataaacaaaatattttaatatcggagactattttgattaac 68  Q
    |||||||||| |||||||| ||||||| ||| |||||||||||| || |  |||||||||| ||||    
T  14984564 tatattgaaggattaatatgacaatattaacgaaatattttaatgtcaggaactattttgactaac 14984499  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 54558393 - 54558437
Alignment:
Q  1 aatatattgaagtattaatataacaatataaacaaaatattttaa 45  Q
    |||||||||||  |||||||||||||||| ||| |||||||||||    
T  54558393 aatatattgaatgattaatataacaatattaacgaaatattttaa 54558437  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 3599940 - 3599845
Alignment:
Q  16 taatataacaatataaacaaaatattttaatatcggagactattttgattaacaaaaatacacaattagatactattttaaaattt-aatacattaa 111  Q
    |||||| |||||||  || |||||||||||  |  ||||| |||||||||||| |||||||||||| | | ||||||||||||||| ||||||||||    
T  3599940 taatatgacaatatttacgaaatattttaacgtgagagaccattttgattaac-aaaatacacaatcaaacactattttaaaatttcaatacattaa 3599845  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 24444394 - 24444441
Alignment:
Q  53 gactattttgattaacaaaaatacacaattagatactattttaaaattt 101  Q
    |||||||||||||||| |||||||||||| | |||| ||||||||||||    
T  24444394 gactattttgattaac-aaaatacacaatcaaataccattttaaaattt 24444441  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 2262149 - 2262215
Alignment:
Q  52 agactattttgattaacaaaaatacacaattagatactattttaaaattt-aatacattaaatgacta 118  Q
    |||||||||| ||||| |||| | || ||||||||||||||||||||||| ||||||||||| |||||    
T  2262149 agactattttaattaataaaa-tgcataattagatactattttaaaatttcaatacattaaaggacta 2262215  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 48701717 - 48701762
Alignment:
Q  55 ctattttgattaacaaaaatacacaattagatactattttaaaattt 101  Q
    ||||||||| |||||||| |||| |||||||||||||||||||||||    
T  48701717 ctattttgactaacaaaa-tacataattagatactattttaaaattt 48701762  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 8069084 - 8069129
Alignment:
Q  3 tatattgaagtattaatataacaatataaacaaaatattttaatat 48  Q
    |||||||| | |||||||| ||||||| ||||||||||||||||||    
T  8069084 tatattgatggattaatatgacaatattaacaaaatattttaatat 8069129  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 82935 - 82886
Alignment:
Q  51 gagactattttgattaacaaaaatacacaattagatactattttaaaattt 101  Q
    |||||||||||||||||| |||||| ||||| ||||||||||||| |||||    
T  82935 gagactattttgattaac-aaaatatacaatcagatactattttagaattt 82886  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 21603567 - 21603501
Alignment:
Q  5 tattgaagtattaatataacaatataaacaaaatattttaatatcggagactattttgattaacaaa 71  Q
    |||||||| | ||| || ||||||| ||| |||||||||||||||  |||||||||||| |||||||    
T  21603567 tattgaagaactaacatgacaatattaacgaaatattttaatatcaaagactattttgactaacaaa 21603501  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 15301535 - 15301595
Alignment:
Q  3 tatattgaagtattaatataacaatataaacaaaatattttaatatcggagactattttga 63  Q
    |||||||||||| |||||  ||||||| ||| || ||||||||| || |||||||||||||    
T  15301535 tatattgaagtactaataagacaatattaacgaagtattttaatgtcagagactattttga 15301595  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 21602124 - 21602188
Alignment:
Q  3 tatattgaagtattaatataacaatataaacaaaatattttaatatcggagactattttgattaa 67  Q
    |||||||||| | |||||| ||||||| ||| || ||||||||| || | |||||||||||||||    
T  21602124 tatattgaaggactaatatgacaatattaacgaattattttaatgtcagggactattttgattaa 21602188  T

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