View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6225_low_9 (Length: 295)

Name: NF6225_low_9
Description: NF6225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6225_low_9
NF6225_low_9
[»] chr3 (3 HSPs)
chr3 (29-281)||(14175073-14175327)
chr3 (29-249)||(952517-952738)
chr3 (218-281)||(5565228-5565291)
[»] scaffold0007 (1 HSPs)
scaffold0007 (29-281)||(257683-257935)
[»] chr4 (2 HSPs)
chr4 (36-235)||(10715002-10715199)
chr4 (36-235)||(10928772-10928969)
[»] chr7 (1 HSPs)
chr7 (125-212)||(11637791-11637878)
[»] chr8 (1 HSPs)
chr8 (101-181)||(38442662-38442742)
[»] chr2 (1 HSPs)
chr2 (101-183)||(38955295-38955376)
[»] chr1 (1 HSPs)
chr1 (101-183)||(22964541-22964622)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 29 - 281
Target Start/End: Original strand, 14175073 - 14175327
Alignment:
Q  29 tccgctgtcgtcgatgaatttcgtaaatttgaaatctttttcgnnnnnnnnn--catctgggttttagtttttataaggagggaagtgaaacctaaccgc 126  Q
    |||||||||||||| ||||||||||||||||||||||||||||           ||||||| ||||  ||||||||||||||||||||||||||||||||    
T  14175073 tccgctgtcgtcgacgaatttcgtaaatttgaaatctttttcgttttttttttgcatctggattttcatttttataaggagggaagtgaaacctaaccgc 14175172  T
Q  127 ggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaatgtttttccgacgc 226  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||    
T  14175173 ggcaatggttttagcgaaggaaacaacaccgacatcattaatttatctccatcggagttgacggattcagcagcggcggtgatgaaagtgtttccgacgc 14175272  T
Q  227 ggtggtcaatcaaagtggtgcaactccggcgtggtggaaagcaaatgggttttgt 281  Q
    |||||||||    | ||||||||||||||||||||||||||||||||||||||||    
T  14175273 ggtggtcaacgtcaatggtgcaactccggcgtggtggaaagcaaatgggttttgt 14175327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 29 - 249
Target Start/End: Original strand, 952517 - 952738
Alignment:
Q  29 tccgctgtcgtcgatgaatttcgtaaatttgaaatctttttcgnnnnnnnnncatctgggttttagtttttataaggagggaagtgaaacc-taaccgcg 127  Q
    |||||||||||||| ||||||||||||||||||||||||||||          ||||||||||| |||||| ||||||||||||||||||| ||||||||    
T  952517 tccgctgtcgtcgacgaatttcgtaaatttgaaatctttttcgttttttttttatctgggttttcgtttttgtaaggagggaagtgaaaccctaaccgcg 952616  T
Q  128 gcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaatgtttttccgacgcg 227  Q
    | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||    
T  952617 gtgatggttttagcgaagaaaataacaccgacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaaaatgtttccgacgcg 952716  T
Q  228 gtggtcaatcaaagtggtgcaa 249  Q
    ||||||||  | ||||||||||    
T  952717 gtggtcaacgacagtggtgcaa 952738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 5565291 - 5565228
Alignment:
Q  218 ttccgacgcggtggtcaatcaaagtggtgcaactccggcgtggtggaaagcaaatgggttttgt 281  Q
    ||||||||| ||||||||  |  |||||||||||||||||||||||||| ||| ||||||||||    
T  5565291 ttccgacgcagtggtcaacgacggtggtgcaactccggcgtggtggaaaacaagtgggttttgt 5565228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 29 - 281
Target Start/End: Complemental strand, 257935 - 257683
Alignment:
Q  29 tccgctgtcgtcgatgaatttcgtaaatttgaaatctttttcgnnnnnnnnncatctgggttttagtttttataaggagggaagtgaaacctaaccgcgg 128  Q
    |||||||| |||||  ||||| ||||||||||||||||||||          ||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  257935 tccgctgttgtcgacaaattttgtaaatttgaaatctttttctttgttttttcatctggattttcgtttttataaggagggaagtgaaacataaccgcgg 257836  T
Q  129 cgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaatgtttttccgacgcgg 228  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||  ||||||||||||| || |||||||||| |    
T  257835 cgatggttttagcgaagaaaacaacaccaacatcattaatttatctccatcggagttgacggatttagcaacggcggtgatgaaagtgtttccgacgcag 257736  T
Q  229 tggtcaatcaaagtggtgcaactccggcgtggtggaaagcaaatgggttttgt 281  Q
    |||||||  | ||||||  ||||||||||||| ||||||||||||||||||||    
T  257735 tggtcaacgacagtggtttaactccggcgtggaggaaagcaaatgggttttgt 257683  T

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Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 10715002 - 10715199
Alignment:
Q  36 tcgtcgatgaatttcgtaaatttgaaatctttttcgnnnnnnnnncatctgggttttagtttttataaggagggaagtgaaacctaaccgcggcgatggt 135  Q
    ||||||| ||||||||||||||||||||||||||||          |||||| |||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  10715002 tcgtcgacgaatttcgtaaatttgaaatctttttcgttttttttt-atctgg-ttttcgtttttataagaagggaagtgaatcctaaccgcggcgatggt 10715099  T
Q  136 tttagcgaagaaaacaacaccgacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaatgtttttccgacgcggtggtcaa 235  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||    
T  10715100 tttagtgaagacaacaacaccaacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaaagtgttttcgacgcggtggtcaa 10715199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 10928772 - 10928969
Alignment:
Q  36 tcgtcgatgaatttcgtaaatttgaaatctttttcgnnnnnnnnncatctgggttttagtttttataaggagggaagtgaaacctaaccgcggcgatggt 135  Q
    ||||||| ||||||||||||||||||||||||||||          |||||| |||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  10928772 tcgtcgacgaatttcgtaaatttgaaatctttttcgttttttttt-atctgg-ttttcgtttttataagaagggaagtgaatcctaaccgcggcgatggt 10928869  T
Q  136 tttagcgaagaaaacaacaccgacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaatgtttttccgacgcggtggtcaa 235  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||    
T  10928870 tttagtgaagacaacaacaccaacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaaagtgttttcgacgcggtggtcaa 10928969  T

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Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 11637791 - 11637878
Alignment:
Q  125 gcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaa 212  Q
    |||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11637791 gcggcgatggttatagcgaagaaaacaacaccggcaacattaatttatctccatcggagttgacggatccagcggcggcggtgatgaa 11637878  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 38442662 - 38442742
Alignment:
Q  101 taaggagggaagtgaaacctaaccgcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcgg 181  Q
    |||| |||||||||||||||||| | | | | ||||| |||||||||||||||||| | | ||||||||||||||||||||    
T  38442662 taagtagggaagtgaaacctaacagggacaagggtttcagcgaagaaaacaacaccaaaaacattaatttatctccatcgg 38442742  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 38955295 - 38955376
Alignment:
Q  101 taaggagggaagtgaaacctaaccgcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggag 183  Q
    |||||| ||||||||||  |||| | ||||||||||| || |||||||||||||||   | ||||||||||||||||||||||    
T  38955295 taaggatggaagtgaaaa-taacaggggcgatggtttcagagaagaaaacaacaccagaaacattaatttatctccatcggag 38955376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 22964622 - 22964541
Alignment:
Q  101 taaggagggaagtgaaacctaaccgcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggag 183  Q
    ||||||||||| |||||  |||| | || |||||||| || ||||||||||||||| | | ||||||||||||||||||||||    
T  22964622 taaggagggaattgaaaa-taacaggggtgatggtttcagagaagaaaacaacaccaaaaacattaatttatctccatcggag 22964541  T

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