View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6226_high_1 (Length: 543)
Name: NF6226_high_1
Description: NF6226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6226_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 7 - 528
Target Start/End: Complemental strand, 3713841 - 3713324
Alignment:
| Q |
7 |
gacatcatcaaatcttataaaacaatcgtaaaatgattatcaacgacaccgttattaagaagaacttttcctccagcaactttataaatgtgaagttgaa |
106 |
Q |
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| T |
3713841 |
gacaacatcaaatctcataaaataattgtaaaatgattatcaacgacactattattaataagaacttttccttcaacgactttataaatgtaaagttgaa |
3713742 |
T |
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| Q |
107 |
tttgatcaaattagggtattctactattatttttgtaaaagttgcactttagactttcaatgaaatcataatatcatcataatttcttaacttaccgtaa |
206 |
Q |
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| T |
3713741 |
tttggtcaaattagggtatgctactattatttttataaaagttgcactttagactttcaatgaaatcataatatcatcataatttcaaaacttaccgtaa |
3713642 |
T |
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| Q |
207 |
cttcaaacatgcactaagtagcctggtcggtaaataaagacatcgaacaactacaattttggagacagatgaattttgcagatcatatatacttgatgct |
306 |
Q |
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| T |
3713641 |
cttcaaacatgcactaagtagcctggtcggtaaataaagacatcgaacaactacaattttggagacagatgaattttgcagatcata----cttgatgct |
3713546 |
T |
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| Q |
307 |
aatttgctgaaaatcttaattccgtatcagttggttcagttatagtatatcccttatggtagggatggtcaatgagatgtccctagtgtttaaaaatgat |
406 |
Q |
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| T |
3713545 |
aatttgctgaaaatcttaattccctatcagttggttcagttatagtatatcccttatggtagggatggtcaatgagatgtccctagtgtttaaaaatgat |
3713446 |
T |
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| Q |
407 |
ctgaaaatacgggttggggagacaaatgtggacccttgatatcttcagcttcgtttcaaggttcatctttccaaacacctgcatgttctcttaaagatcc |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3713445 |
ctgaaaatacgggttggggagacaaatgtggacccttgatatcttcagcttcgtttcaaggttcatctttccaaacacctgcatgttctcttaaagatcc |
3713346 |
T |
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| Q |
507 |
ccttctatcccatacaaaacct |
528 |
Q |
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| T |
3713345 |
ccttctatcccatacaaaacct |
3713324 |
T |
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