View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6226_low_1 (Length: 559)
Name: NF6226_low_1
Description: NF6226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6226_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 13 - 540
Target Start/End: Complemental strand, 53617280 - 53616753
Alignment:
| Q |
13 |
aatatacaccaaatgatgcgcttctaatattgcgtgacaaatatcttcccaacatttcccctgctgaaactcaacaccatcatccaattcaatctccggt |
112 |
Q |
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| T |
53617280 |
aatatacaccaaatgatgcgcttctaatattgcgtgacaaatatcttcccaacatttcccctgctgaaactcaacaccatcatccaattcaatctccggt |
53617181 |
T |
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| Q |
113 |
aacatcgaatccggaacgtgtgcatcttgatacagcgtcaccgatcctcctcgccgaaccggaaaatacgaatcctgaaccgcaaacctatcaggaccgg |
212 |
Q |
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| T |
53617180 |
aacatcgaatctggaacgtgtgcatcttgatacagcgtcaccgatcctcctcgccgaaccggaaaatacgaatcctgaaccgcaaacctatcaggaccgg |
53617081 |
T |
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| Q |
213 |
gaataacgccggaacgatacataggattttcatcgcatctcgtgaatttcatttcgagaaaaacagcgcaatcaggttttggaggtttaccgaatgaacc |
312 |
Q |
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| T |
53617080 |
gaataacaccggaacgatacataggattttcatcgcatctcgtgaatttcatttcgagaaaaacagcgcaatcaggttttggaggtttaccgaatgaacc |
53616981 |
T |
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| Q |
313 |
tataatcggaaaccaatcgcttatatcttcacctgataagatcctctttgcagaaacggttgcgattccgatcaaatcagcaccgaacatgtcgttatct |
412 |
Q |
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| T |
53616980 |
tataatcggaaaccaatcgcttatatcttcacctgataagatcctcttcgcagaaacggttgcgattccgatcaaatcagcaccgaacatgtcgttatct |
53616881 |
T |
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| Q |
413 |
ttgacgtagaattcaacttgagaaacaggatgagccaatggaattttgaaatgctcttcccatttcggtgattgtgagtttgagataacgcgcgtacgcg |
512 |
Q |
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| T |
53616880 |
ttgacgtagaattcaacttgagaaacaggatgagccaatggaattttgaaatgctcttcccatttcggtgattgtgagtttgagataacgcgcgtacgcg |
53616781 |
T |
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| Q |
513 |
ccactgtagcaccggcgagacaaacggt |
540 |
Q |
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| T |
53616780 |
ccactgtagcaccggcgagacaaacggt |
53616753 |
T |
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