View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6226_low_6 (Length: 251)
Name: NF6226_low_6
Description: NF6226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6226_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 37004844 - 37004596
Alignment:
| Q |
3 |
tggagtagcataggtcgtggtggataatgccagatggcgatcgggagtaccttgtggcagcttcagctcaaggtgttagaattggcggagggtgctggat |
102 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37004844 |
tggaatagcataggtcgtggtggataatgccaggtggcgatcgggagtaccttgtggcagcttcagctcaaggtgttagaattggcggagggtgctggat |
37004745 |
T |
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| Q |
103 |
ggaggtggtggaaggtatccggcagcgtgtgttgtcatggaggagaagggagagggagtcacatacaacggtggaaagggaaaataatatactatcccat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37004744 |
ggaggtggtggaaggtatccggcagcgtgtgttgtcatggaggagaagggagagggagtcacatacaacggtggaaagggaaaataatatactatcccat |
37004645 |
T |
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| Q |
203 |
tcatcttaaatccagctccttagggtatatgttagtattagggcaagcc |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37004644 |
tcatcttaaatccagctccttagggtatatgttagtattagggcaagcc |
37004596 |
T |
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