View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6226_low_7 (Length: 242)
Name: NF6226_low_7
Description: NF6226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6226_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 37004517 - 37004285
Alignment:
| Q |
1 |
gatctatcttctctgattctagctaccaaacacagtcttcccctttgtgttcagtcaaacaataaacattatttttatgattgaataccatgtcgtttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37004517 |
gatctatcttctctgattctagctaccaaacacagtcttcccctttgtgttcagtcaaacaataaacattatttttatgattgaataccatgtcgtttct |
37004418 |
T |
|
| Q |
101 |
gtctctgttagacttgcgaatatttagatttactagcatcttccacgtctttgcagttannnnnnnaatttcaaatgaaaatatatagatgatattttgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37004417 |
gtctctgttagacttgcgaatatttagatttactagcatcttccacgtctttgcagttatttttttaatttcaaatgaaaatatatagatgatattttgg |
37004318 |
T |
|
| Q |
201 |
cactctagctgctttgtaaactgtattgatgat |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
37004317 |
cactctagctgctttgtaaactgtattgatgat |
37004285 |
T |
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