View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6227_high_21 (Length: 283)

Name: NF6227_high_21
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6227_high_21
NF6227_high_21
[»] chr2 (9 HSPs)
chr2 (1-283)||(7886683-7886964)
chr2 (167-277)||(18425992-18426104)
chr2 (167-283)||(26656366-26656484)
chr2 (208-282)||(33453214-33453290)
chr2 (218-283)||(22464755-22464820)
chr2 (218-283)||(22483634-22483699)
chr2 (218-283)||(34526437-34526502)
chr2 (208-283)||(12539646-12539723)
chr2 (208-283)||(19951856-19951933)
[»] chr8 (10 HSPs)
chr8 (173-283)||(32371996-32372108)
chr8 (173-283)||(32342854-32342966)
chr8 (173-283)||(32355341-32355453)
chr8 (173-283)||(32359460-32359572)
chr8 (208-283)||(16532656-16532733)
chr8 (199-283)||(13152419-13152505)
chr8 (208-283)||(10014460-10014537)
chr8 (218-283)||(30791483-30791548)
chr8 (229-280)||(27190867-27190918)
chr8 (208-283)||(14446905-14446982)
[»] chr5 (8 HSPs)
chr5 (167-280)||(19518970-19519085)
chr5 (208-283)||(22712924-22713001)
chr5 (218-283)||(26540680-26540745)
chr5 (208-283)||(203923-204000)
chr5 (218-283)||(27168828-27168893)
chr5 (208-277)||(1280451-1280522)
chr5 (199-283)||(2228979-2229065)
chr5 (218-282)||(8785867-8785931)
[»] chr3 (3 HSPs)
chr3 (166-279)||(22934828-22934943)
chr3 (199-283)||(3856901-3856987)
chr3 (208-283)||(24988838-24988915)
[»] chr4 (6 HSPs)
chr4 (167-283)||(10632669-10632789)
chr4 (167-282)||(8897952-8898070)
chr4 (167-280)||(3240302-3240417)
chr4 (208-280)||(31944689-31944763)
chr4 (208-283)||(3074442-3074519)
chr4 (247-283)||(4325525-4325561)
[»] chr1 (10 HSPs)
chr1 (218-283)||(40864744-40864809)
chr1 (167-279)||(17874810-17874924)
chr1 (208-283)||(25017459-25017536)
chr1 (218-282)||(21973814-21973878)
chr1 (199-279)||(14498961-14499043)
chr1 (208-283)||(9637194-9637271)
chr1 (208-283)||(35949003-35949080)
chr1 (218-283)||(48606637-48606702)
chr1 (218-283)||(26272954-26273019)
chr1 (218-283)||(30054906-30054971)
[»] scaffold0726 (1 HSPs)
scaffold0726 (208-283)||(956-1033)
[»] scaffold0019 (1 HSPs)
scaffold0019 (208-283)||(134879-134956)
[»] chr7 (7 HSPs)
chr7 (208-283)||(26493739-26493816)
chr7 (199-283)||(9230465-9230551)
chr7 (218-283)||(14088833-14088898)
chr7 (218-283)||(14398851-14398916)
chr7 (227-282)||(25024617-25024672)
chr7 (218-283)||(8638699-8638765)
chr7 (229-283)||(9557784-9557838)
[»] scaffold0178 (1 HSPs)
scaffold0178 (218-283)||(17825-17890)
[»] scaffold0168 (1 HSPs)
scaffold0168 (218-283)||(15899-15964)
[»] scaffold0012 (1 HSPs)
scaffold0012 (218-283)||(197190-197255)
[»] chr6 (5 HSPs)
chr6 (208-283)||(3050936-3051013)
chr6 (226-283)||(11971053-11971109)
chr6 (218-283)||(12180550-12180615)
chr6 (208-283)||(32441999-32442076)
chr6 (208-277)||(25340518-25340589)
[»] scaffold0007 (1 HSPs)
scaffold0007 (218-283)||(260003-260068)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 7886964 - 7886683
Alignment:
Q  1 cattaaatttcctcaaagtgtattgagcacaatatcgaaagagtatcatcaagttgtaacaaatgacattgttataggcggaggcattagtctgaactca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||    
T  7886964 cattaaatttcctcaaagtgtattgagcacaatatcgaaagagtatcatcaagttgtaacaaatgacattgtcataggcggaggcattagcccgaactca 7886865  T
Q  101 atcgatattttctttatattaaattcaactcaataacctattaacctatttnnnnnnnnnntggataaacttaaatatttttcacacgcgcacaacaaaa 200  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||| ||          |||| ||||| |||||||||||||| |||||||||||||    
T  7886864 atcgatactttctttatattaaattcaacccaataacctattaacctactt-aaaaaaaaatggacaaactcaaatatttttcacaagcgcacaacaaaa 7886766  T
Q  201 gtcatccgatgatgttgattattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7886765 gtcatccgatgatgttgattattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 7886683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 277
Target Start/End: Complemental strand, 18426104 - 18425992
Alignment:
Q  167 aaacttaaatatttttcacacgcgcacaacaaaagtcatccgatgatgttg--attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacc 264  Q
    ||||| |||||||||||||||| |||||||||||||||   ||| ||||||  ||||||| ||||||||||| ||||| || ||| ||| || | |||||    
T  18426104 aaactcaaatatttttcacacgtgcacaacaaaagtcacttgataatgttgatattattcgaacattcaccgtaaagaggtctcaaaaatgttatttacc 18426005  T
Q  265 tcctaattttatt 277  Q
    |||||||||||||    
T  18426004 tcctaattttatt 18425992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 283
Target Start/End: Complemental strand, 26656484 - 26656366
Alignment:
Q  167 aaacttaaatatttttcacacgcgcacaacaaaagtcatccgatga-tgttg--attattcaaacattcaccgcaaagaagtttcagaaaggtcacttac 263  Q
    ||||| ||||||||||||||||||||||||||||||||   || || |||||  ||||||| |||||||||||||||||  | | || ||||||| ||||    
T  26656484 aaactcaaatatttttcacacgcgcacaacaaaagtcacttgacgattgttgatattattcgaacattcaccgcaaagagatcttag-aaggtcatttac 26656386  T
Q  264 ctcctaattttatttagcac 283  Q
    ||||||||||||||| ||||    
T  26656385 ctcctaattttatttcgcac 26656366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 33453290 - 33453214
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagca 282  Q
    ||||||||||||  ||||| ||||||||||||||||| || ||||||||  || |||||||||||||||||||||||    
T  33453290 gatgatgttgatattattcgaacattcaccgcaaagaggtatcagaaagagcatttacctcctaattttatttagca 33453214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 22464755 - 22464820
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    |||||||||||||||||||||||||| | ||  ||||| || ||||||||||||||||| ||||||    
T  22464755 attattcaaacattcaccgcaaagaaatctcgaaaagggcatttacctcctaattttatctagcac 22464820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 22483634 - 22483699
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||| |||||||||||||||||| | || |||||| || ||||||||||||||||| ||||||    
T  22483634 attattcgaacattcaccgcaaagaaatctcggaaagggcatttacctcctaattttatctagcac 22483699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 34526437 - 34526502
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||| |||||||||||||||||| | || |||||| || ||||||||||||||||| ||||||    
T  34526437 attattcgaacattcaccgcaaagaaatctcggaaagggcatttacctcctaattttatctagcac 34526502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 12539646 - 12539723
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||| ||||||||||||||||| || |  |||||  || ||||||||||||||||||||||||    
T  12539646 gatgatgttgatattattcgaacattcaccgcaaagaggtcttggaaagaacatttacctcctaattttatttagcac 12539723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 19951933 - 19951856
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||| ||||||||||||||||| || ||  ||||| || |||||| ||||||| |||||||||    
T  19951933 gatgatgttgatattattcgaacattcaccgcaaagaggtctcgaaaagggcatttaccttctaatttaatttagcac 19951856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 32371996 - 32372108
Alignment:
Q  173 aaatatttttcacacgcgcacaacaaaagtcatccgatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaa 270  Q
    |||||||||||||||||||||| |||||||||   ||||||||||||  ||||| ||||||||||||||||| || ||| |||||||| |||||||||||    
T  32371996 aaatatttttcacacgcgcacaccaaaagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtctcaaaaaggtcatttacctcctaa 32372095  T
Q  271 ttttatttagcac 283  Q
    |||||||||||||    
T  32372096 ttttatttagcac 32372108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 32342854 - 32342966
Alignment:
Q  173 aaatatttttcacacgcgcacaacaaaagtcatccgatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaa 270  Q
    ||||||||||||||| |||||| |||||||||   ||||||||||||  ||||| ||||||||| ||||| | || ||| |||||||| |||||||||||    
T  32342854 aaatatttttcacacccgcacaccaaaagtcacttgatgatgttgatattattcgaacattcactgcaaaaaggtctcaaaaaggtcatttacctcctaa 32342953  T
Q  271 ttttatttagcac 283  Q
    |||||||||||||    
T  32342954 ttttatttagcac 32342966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 32355341 - 32355453
Alignment:
Q  173 aaatatttttcacacgcgcacaacaaaagtcatccgatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaa 270  Q
    ||||||||||||||| |||||| |||||||||   ||||||||||||  ||||| ||||||||| ||||| | || ||| |||||||| |||||||||||    
T  32355341 aaatatttttcacacccgcacaccaaaagtcacttgatgatgttgatattattcgaacattcactgcaaaaaggtctcaaaaaggtcatttacctcctaa 32355440  T
Q  271 ttttatttagcac 283  Q
    |||||||||||||    
T  32355441 ttttatttagcac 32355453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 32359460 - 32359572
Alignment:
Q  173 aaatatttttcacacgcgcacaacaaaagtcatccgatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaa 270  Q
    ||||||||||||||| |||||| |||||||||   ||||||||||||  ||||| ||||||||| ||||||| || ||| ||| |||| |||||||||||    
T  32359460 aaatatttttcacacccgcacaccaaaagtcacttgatgatgttgatattattcgaacattcactgcaaagaggtctcaaaaatgtcatttacctcctaa 32359559  T
Q  271 ttttatttagcac 283  Q
    |||||||||||||    
T  32359560 ttttatttagcac 32359572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 16532733 - 16532656
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  |||||||||||||||||||||||  | || |||||| || ||||||||||||||||||||||||    
T  16532733 gatgatgttgatattattcaaacattcaccgcaaagagatatcggaaagggcatttacctcctaattttatttagcac 16532656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 13152505 - 13152419
Alignment:
Q  199 aagtcatccgatgatgttg--attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    |||||||  ||||||||||  ||||||| |||||||| |||||||| || || |||||| || ||||||||||||||||||||||||    
T  13152505 aagtcatttgatgatgttggtattattccaacattcatcgcaaagaggtctcggaaagggcatttacctcctaattttatttagcac 13152419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 10014537 - 10014460
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||||||||||||||| |||||  |||  |||||| || ||||||||||||||||||||||||    
T  10014537 gatgatgttgatattattcaaacattcaccggaaagagattttggaaagggcatttacctcctaattttatttagcac 10014460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 30791548 - 30791483
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||| ||||||||||||||||| || || |||||| || ||||| ||||||||||||||||||    
T  30791548 attattcgaacattcaccgcaaagaggtctcggaaagggcatttaccacctaattttatttagcac 30791483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 27190867 - 27190918
Alignment:
Q  229 attcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttag 280  Q
    |||||||||||||| || ||||||||| || |||||||||||||||||||||    
T  27190867 attcaccgcaaagatgtctcagaaaggacatttacctcctaattttatttag 27190918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 14446905 - 14446982
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||| ||||||||| ||||||| || || |||||| || | ||||||||||||||||||||||    
T  14446905 gatgatgttgatattattctaacattcactgcaaagaggtctcggaaaggacattcacctcctaattttatttagcac 14446982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 280
Target Start/End: Complemental strand, 19519085 - 19518970
Alignment:
Q  167 aaacttaaatatttttcacacgcgcacaacaaaagtcatccgatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacc 264  Q
    ||||| |||||||||| ||||||| |||||||||||||   ||||||||||||  ||||| ||||||||||||||||| || |  ||||||||| |||||    
T  19519085 aaactcaaatattttttacacgcgtacaacaaaagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtattggaaaggtcatttacc 19518986  T
Q  265 tcctaattttatttag 280  Q
     |||||||||||||||    
T  19518985 acctaattttatttag 19518970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 22713001 - 22712924
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||||||||||||||||||||| || ||||||||  || ||||||||||||||||||||||||    
T  22713001 gatgatgttgatattattcaaacattcaccgcaaagaggtctcagaaagagcatttacctcctaattttatttagcac 22712924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 26540745 - 26540680
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||| |||||||||||||||||| | ||||||||| || ||||||||||||||||| ||||||    
T  26540745 attattcgaacattcaccgcaaagaaatctcagaaagggcatttacctcctaattttatctagcac 26540680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 203923 - 204000
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||| ||||||||||| ||||| || || |||||| || ||||||||||||||||||||||||    
T  203923 gatgatgttgatattattcgaacattcaccggaaagaggtctcggaaaggacatttacctcctaattttatttagcac 204000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 27168893 - 27168828
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||| ||||||||||| || || || ||| ||||| || ||||||||||||||||||||||||    
T  27168893 attattcgaacattcaccgaaatgaggtctcataaagggcatttacctcctaattttatttagcac 27168828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 1280451 - 1280522
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatt 277  Q
    ||||||||||||  ||||| ||||||||||||||||| || || |||| | || ||||||||||||||||||    
T  1280451 gatgatgttgatattattcgaacattcaccgcaaagaggtctcggaaaaggcatttacctcctaattttatt 1280522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 2228979 - 2229065
Alignment:
Q  199 aagtcatccgatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    |||||||  ||||||||||||  ||||  |||||||| |||||||| |||  || |||| || ||||||||||||||||||||||||    
T  2228979 aagtcatttgatgatgttgatattatttgaacattcatcgcaaagaggttctaggaagggcatttacctcctaattttatttagcac 2229065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 8785867 - 8785931
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagca 282  Q
    ||||||| ||||||||||||||| | || ||  |||||   ||||||||||||||||||||||||    
T  8785867 attattcgaacattcaccgcaaataggtctcgaaaagggttcttacctcctaattttatttagca 8785931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 279
Target Start/End: Complemental strand, 22934943 - 22934828
Alignment:
Q  166 taaacttaaatatttttcacacgcgcacaacaaaagtcatccgatgatgttg--attattcaaacattcaccgcaaagaagtttcagaaaggtcacttac 263  Q
    |||||| ||||||||||||||||||| ||||||||||||   ||||||||||  ||||||  ||||||||||||||||| || || ||||||||| ||||    
T  22934943 taaactcaaatatttttcacacgcgcgcaacaaaagtcacttgatgatgttgatattattagaacattcaccgcaaagaggtctcggaaaggtcatttac 22934844  T
Q  264 ctcctaattttattta 279  Q
    ||| ||||||| ||||    
T  22934843 ctcttaattttgttta 22934828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 3856987 - 3856901
Alignment:
Q  199 aagtcatccgatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    |||||||  ||||||||||||  ||||||||||||||||||||||| || ||||||||   | ||||||||||||||||||||||||    
T  3856987 aagtcatttgatgatgttgatattattcaaacattcaccgcaaagaggtctcagaaagaaaatttacctcctaattttatttagcac 3856901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 24988915 - 24988838
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||| ||||||||||||||||| || || |||||| ||  || ||||||||||||||||||||    
T  24988915 gatgatgttgatattattcgaacattcaccgcaaagaggtctcggaaagggcatgtatctcctaattttatttagcac 24988838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 283
Target Start/End: Complemental strand, 10632789 - 10632669
Alignment:
Q  167 aaacttaaatatttttcacacgcgcacaacaaaagtcatccgatgatgttga--ttattcaaaca--ttcaccgcaaagaagtttcagaaaggtcactta 262  Q
    ||||| ||||||||||||||||||||||||||||||||   ||||||||| |  |||||| ||||  |||||||||||||||| || ||||  ||| |||    
T  10632789 aaactcaaatatttttcacacgcgcacaacaaaagtcacttgatgatgttaatgttattcgaacattttcaccgcaaagaagtctcggaaatatcattta 10632690  T
Q  263 cctcctaattttatttagcac 283  Q
    |||||||||||||||| ||||    
T  10632689 cctcctaattttattttgcac 10632669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 8898070 - 8897952
Alignment:
Q  167 aaacttaaatatttttcacacgcgcacaacaaaa-gtcatccgatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttac 263  Q
    ||||| ||||||||| | |||||||||||||||| ||||   ||||||||||||  ||||| | ||||||||||||||| || ||||||||   | ||||    
T  8898070 aaactcaaatattttgctcacgcgcacaacaaaaagtcactggatgatgttgatattattcgagcattcaccgcaaagaggtctcagaaagactatttac 8897971  T
Q  264 ctcctaattttatttagca 282  Q
    |||||||||||||||||||    
T  8897970 ctcctaattttatttagca 8897952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 280
Target Start/End: Complemental strand, 3240417 - 3240302
Alignment:
Q  167 aaacttaaatatttttcacacgcgcacaacaaaagtcatccgatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacc 264  Q
    ||||| |||||||||||||||||||||||||||||| |   ||||||||||||  ||||| || ||||||||||||||  | ||  ||| || | || ||    
T  3240417 aaactcaaatatttttcacacgcgcacaacaaaagttacttgatgatgttgataatattcgaatattcaccgcaaagagatctcgaaaatgttatttgcc 3240318  T
Q  265 tcctaattttatttag 280  Q
    ||||||||||||||||    
T  3240317 tcctaattttatttag 3240302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 31944689 - 31944763
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttag 280  Q
    ||||||||||||  ||||| ||||||||||||||||| || || |||||| || |||||||||||||||||||||    
T  31944689 gatgatgttgatattattcgaacattcaccgcaaagaggtctcggaaagggcatttacctcctaattttatttag 31944763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 3074442 - 3074519
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||  |||||||| |||||||| || |||| |||| || ||| ||||||||||||||||||||    
T  3074442 gatgatgttgatattatttgaacattcatcgcaaagaggtctcaggaagggcatttatctcctaattttatttagcac 3074519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 4325525 - 4325561
Alignment:
Q  247 tcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||| || ||||||||||||||||||||||||    
T  4325525 tcagaaagggcaattacctcctaattttatttagcac 4325561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 40864809 - 40864744
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||| ||||||||||||||||| |||| ||||||| || ||||||||||||||||||||||||    
T  40864809 attattcgaacattcaccgcaaagaggttttagaaagggcatttacctcctaattttatttagcac 40864744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 17874810 - 17874924
Alignment:
Q  167 aaacttaaatatttttcacacgcgcacaacaaaagtcatccgatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacc 264  Q
    ||||| ||||||||||||||| || ||||||||  |||   ||||||||||||  ||||||||||||||||||||||| || ||  |||| ||| |||||    
T  17874810 aaactcaaatatttttcacactcgtacaacaaatatcactggatgatgttgatattattcaaacattcaccgcaaagaggtctcgaaaagatcatttacc 17874909  T
Q  265 tcctaattttattta 279  Q
    | |||||||||||||    
T  17874910 ttctaattttattta 17874924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 25017459 - 25017536
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||| ||| ||||||||||||| || ||||||||| ||  |||||||||||||||||||||||    
T  25017459 gatgatgttgatattattcgaacgttcaccgcaaagaggtctcagaaagggcatatacctcctaattttatttagcac 25017536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 21973878 - 21973814
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagca 282  Q
    ||||||| |||||||||||||||||| | || |||||| || ||||||||||||||||| |||||    
T  21973878 attattcgaacattcaccgcaaagaaatctcggaaagggcatttacctcctaattttatctagca 21973814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 14498961 - 14499043
Alignment:
Q  199 aagtcatccgatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttattta 279  Q
    |||||||  ||||||||||||  ||||| |||||||| |||||||| || ||||||||| || ||||||||||||| ||||||    
T  14498961 aagtcatttgatgatgttgatattattcgaacattcatcgcaaagaggtctcagaaaggacatttacctcctaattatattta 14499043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 9637194 - 9637271
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||  ||||||||||||||||| || || |||||| || |||| |||||||||||||||||||    
T  9637194 gatgatgttgatattatttgaacattcaccgcaaagaggtctcggaaagggcatttacatcctaattttatttagcac 9637271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 35949080 - 35949003
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||| ||||||||||| ||||| || || |||||| || ||||||||||||||||||| ||||    
T  35949080 gatgatgttgatgttattcgaacattcaccgaaaagaggtctcggaaaggacatttacctcctaattttattttgcac 35949003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 48606702 - 48606637
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    |||||||||||| |||||||||||| || |  |||||| || ||||||| ||||||||||||||||    
T  48606702 attattcaaacactcaccgcaaagaggtcttcgaaagggcatttacctcataattttatttagcac 48606637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 26273019 - 26272954
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||| |||||||| |||||| | || || |||||| || |||||| |||||||||||||||||    
T  26273019 attattcgaacattcatcgcaaacaggtctcggaaagggcaattacctactaattttatttagcac 26272954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 30054906 - 30054971
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||| ||| ||| ||||||||| || ||| ||| | || ||||||||||||||||||||||||    
T  30054906 attattcgaaccttctccgcaaagaggtatcataaatgacatttacctcctaattttatttagcac 30054971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 956 - 1033
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||| ||||||||||||||||| || || |||||| || ||| ||||||||||||||||||||    
T  956 gatgatgttgatattattcgaacattcaccgcaaagaggtctccgaaagggcatttatctcctaattttatttagcac 1033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 134956 - 134879
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||| ||||||||||| ||||| || || |||||| || ||||||||||||||||||||||||    
T  134956 gatgatgttgatattattcgaacattcaccggaaagaggtctcggaaagggcatttacctcctaattttatttagcac 134879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 26493816 - 26493739
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||| ||||||||||| ||||| || || |||||| || ||||||||||||||||||||||||    
T  26493816 gatgatgttgatattattcgaacattcaccgtaaagaggtctcggaaagggcatttacctcctaattttatttagcac 26493739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 9230465 - 9230551
Alignment:
Q  199 aagtcatccgatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    |||||||  ||||||||||||  ||||| |||||||| |||||||| || ||  ||||| || ||||||||||||||||||||||||    
T  9230465 aagtcatttgatgatgttgatattattcgaacattcatcgcaaagaggtatcgaaaagggcatttacctcctaattttatttagcac 9230551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 14088833 - 14088898
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||| || |||||||| || || |||| | || ||||||||||||||||||||||||    
T  14088833 attattcaaacatccatcgcaaagaggtctcggaaaaggcatttacctcctaattttatttagcac 14088898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 14398851 - 14398916
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||| || |||||||| || || |||| | || ||||||||||||||||||||||||    
T  14398851 attattcaaacatccatcgcaaagaggtctcggaaaaggcatttacctcctaattttatttagcac 14398916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 25024617 - 25024672
Alignment:
Q  227 acattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagca 282  Q
    ||||||||| |||||| || ||||||||| || |||||||||||||||||| ||||    
T  25024617 acattcaccacaaagaggtctcagaaagggcatttacctcctaattttattaagca 25024672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 8638699 - 8638765
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtt-tcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||| |||||||| |||||||| | | || |||||| || ||||||||||||||||||||||||    
T  8638699 attattcgaacattcaacgcaaagagggtctcggaaagggcatttacctcctaattttatttagcac 8638765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 9557784 - 9557838
Alignment:
Q  229 attcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    |||||||||||||| || || ||||||  | ||||||||||||||||||||||||    
T  9557784 attcaccgcaaagaggtctctgaaaggggatttacctcctaattttatttagcac 9557838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 17825 - 17890
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||| ||||||||||||||||| || || |||||| || ||| ||||||||||||||||||||    
T  17825 attattcgaacattcaccgcaaagaggtctccgaaaggacatttaactcctaattttatttagcac 17890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 15899 - 15964
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||| |||||||||||||||||| | || |||||| || ||||||||||||||||| ||||||    
T  15899 attattcgaacattcaccgcaaagaaatctcggaaagggcatttacctcctaattttatctagcac 15964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 197190 - 197255
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    |||||||||||||||||||||||||| | ||  ||||| || ||||||||||||||||| ||||||    
T  197190 attattcaaacattcaccgcaaagaaatctcgaaaagggcatttacctcctaattttatctagcac 197255  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 3050936 - 3051013
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||||||||||||||| ||||| || || |||||  || ||||| ||||||||||||||||||    
T  3050936 gatgatgttgatattattcaaacattcaccggaaagaggtctcggaaagagcatttaccacctaattttatttagcac 3051013  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 11971053 - 11971109
Alignment:
Q  226 aacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||| ||||| || ||||||||| || ||||||||||||||||||||||||    
T  11971053 aacattcaccg-aaagaggtctcagaaagggcatttacctcctaattttatttagcac 11971109  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 12180615 - 12180550
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||| ||||||||||||||||| || || | |||| || |||||| |||||||||||||||||    
T  12180615 attattcgaacattcaccgcaaagaggtctcgggaagggcatttaccttctaattttatttagcac 12180550  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 32442076 - 32441999
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||||||||  ||||| |||||||| | |||||| || || |||||| || ||||||| ||||||||||||||||    
T  32442076 gatgatgttgatattattcgaacattcatcccaaagaggtatcggaaagggcatttacctcttaattttatttagcac 32441999  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 25340518 - 25340589
Alignment:
Q  208 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatt 277  Q
    ||||||||||||  ||||| ||||||||||  ||||| || ||||||||  || ||||||||||||||||||    
T  25340518 gatgatgttgatattattcgaacattcaccataaagaggtctcagaaagtgcatttacctcctaattttatt 25340589  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 260003 - 260068
Alignment:
Q  218 attattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcac 283  Q
    ||||||| ||||||||||||||||| || || |||| | || ||||| ||||||||||||||||||    
T  260003 attattcgaacattcaccgcaaagaggtctcggaaatggcatttaccacctaattttatttagcac 260068  T

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