View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6227_high_25 (Length: 255)
Name: NF6227_high_25
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6227_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 15139985 - 15139747
Alignment:
| Q |
1 |
ttttatgtttgttcctcatcatcaaa-tattacaaatacttacttacaaatatgttgctttcatcttcttaattatatctacatttaatattagtttcag |
99 |
Q |
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| T |
15139985 |
ttttatgtttgttcctcatcatcaaaatattacaaatacttacttacaaatatgttgctttcatcttcttaattatatcaacatttaatattagtttcag |
15139886 |
T |
|
| Q |
100 |
tgtgtactttaaaagaaaattacttcatnnnnnnnctagtagaaacttttttccttcaacattatatcctacttatcaactcttatcttatcacctcaca |
199 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15139885 |
tgtgtactttaaaagaaaattacttcataaaaaaagtagtagaaacttttttccttcaacattatatcctacttatcaactcttatcttatcacctcaca |
15139786 |
T |
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| Q |
200 |
tgatatagattaagaagaaccctagatatagattaagaa |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
15139785 |
tgatatagattaagaagaaccctagatatagattaagaa |
15139747 |
T |
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