View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6227_high_5 (Length: 515)
Name: NF6227_high_5
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6227_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 157 - 384
Target Start/End: Complemental strand, 40115774 - 40115547
Alignment:
| Q |
157 |
aaactgaaaaaaccaatatcaaagattttcctaatacttctctttcactcaacctttttcattcaatcttttatcatcttcacaagtttcttttcatatt |
256 |
Q |
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| T |
40115774 |
aaactgaaaaaaccaatatcaaagattttcctaatacttctctttcactcaacctttttcattcaatcttttatcatcttcacaagtttcttttcatatt |
40115675 |
T |
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| Q |
257 |
caacttctgttgtgaatttcatagcaatctttcttttttaggtctcttcaaataatggtttttctcttttcctttgatttatcctatcccttgggattct |
356 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40115674 |
caacttctgttgtgaattgcatagcaatctttcttttttaggtctcttcaaataatggtttttctcttttcctttgatttatcctatcccttgggattct |
40115575 |
T |
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| Q |
357 |
ttgattcttacacttcctaaatatttcc |
384 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
40115574 |
ttgattcttacacttcctaaatatttcc |
40115547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 40115917 - 40115844
Alignment:
| Q |
14 |
agggaaacatagaaaagggtaatgatagaagttgtttgttgaagcggagaggtcaagtaactgtaaaatagcag |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40115917 |
agggaaacatagaaaagggtaatgatagaagttgtttgttgaagcggagaggtcaagtaactgtaaaatagcag |
40115844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 448 - 502
Target Start/End: Complemental strand, 40115483 - 40115429
Alignment:
| Q |
448 |
atttgatggaccactcttaatttatcatcttggttactttttgtagcatataatt |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40115483 |
atttgatggaccactcttaatttatcatcttggttactttttgtagcatataatt |
40115429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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