View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6227_high_6 (Length: 493)
Name: NF6227_high_6
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6227_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 8864150 - 8863715
Alignment:
| Q |
19 |
ggcttgaacttgatgaacataaagaattttcagaatcagaacttgttttgtctatgttttttgccataactcattgctatatctatgagcttataaagta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8864150 |
ggcttgaacttgatgaacataaagaattttcagaatcagaacttgttttgtctatgttttttgccataactcattgctatatctatgagcttataaagta |
8864051 |
T |
|
| Q |
119 |
agtgaactcattccaatttgtttttgtctatgcctcgtgtcagacagagagaaaccactatgttttcagtattctatatatatagtgtgtgcttatgcga |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8864050 |
agtgaactcattccaatttgtttttgtttatgcctcgtgtcagacagagagaaaccactatgttttcagtattctatatatatagtgtgtgcttatgcga |
8863951 |
T |
|
| Q |
219 |
taaagttttaaaaagataagttatttaaaaggttcttaagtatgaatagtattggtggcaatgtgaaaaacaaccaacatggtgtgacacaagtgactga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8863950 |
taaagttttaaaaagataagttatttaaatggttcttaagtatgaatagtattggtggcaatgtgaaaaacaaccaacatggtgtgacacaagtgactga |
8863851 |
T |
|
| Q |
319 |
atactgatatctggacccttaaccatttggtcgagagttgatctagtcaatgcgtaaagataagaatatacgttgagagatgttaactaattaaataaat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8863850 |
atactgatatctggacccttaaccatttggtcgaaagttgatttattcaatgcgtaaagataagaatatacgttgagagatgttaactaattaaataaat |
8863751 |
T |
|
| Q |
419 |
ctcgtacattttatggtatatattaatttttgtata |
454 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8863750 |
ctcgtacattttgtggtatatattaatttttgtata |
8863715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 455 - 489
Target Start/End: Complemental strand, 8863673 - 8863639
Alignment:
| Q |
455 |
ttttgagagtttaaactttgaaccttcttctcact |
489 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8863673 |
ttttgagagtttaaactttgaaccttcttatcact |
8863639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University