View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6227_high_8 (Length: 476)

Name: NF6227_high_8
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6227_high_8
NF6227_high_8
[»] chr5 (5 HSPs)
chr5 (162-467)||(16727813-16728118)
chr5 (161-296)||(38921455-38921590)
chr5 (161-296)||(35968622-35968757)
chr5 (164-266)||(35967351-35967453)
chr5 (234-315)||(16306720-16306801)
[»] chr1 (12 HSPs)
chr1 (160-467)||(36573961-36574268)
chr1 (161-463)||(26529508-26529809)
chr1 (160-467)||(49917388-49917693)
chr1 (8-156)||(52302762-52302909)
chr1 (160-265)||(36575494-36575599)
chr1 (161-265)||(26531047-26531151)
chr1 (159-296)||(35063548-35063685)
chr1 (160-232)||(26530501-26530573)
chr1 (160-232)||(36574955-36575027)
chr1 (161-252)||(49919671-49919762)
chr1 (161-265)||(35062564-35062668)
chr1 (27-55)||(33937034-33937062)
[»] chr2 (12 HSPs)
chr2 (158-467)||(36668910-36669219)
chr2 (159-467)||(31621860-31622168)
chr2 (161-265)||(31620525-31620629)
chr2 (160-329)||(4753527-4753696)
chr2 (161-265)||(40894828-40894932)
chr2 (159-265)||(35306066-35306172)
chr2 (161-243)||(35298556-35298638)
chr2 (160-265)||(36666200-36666306)
chr2 (365-465)||(40894596-40894694)
chr2 (160-232)||(31621102-31621174)
chr2 (164-215)||(4755043-4755094)
chr2 (161-222)||(40893244-40893305)
[»] chr4 (11 HSPs)
chr4 (162-463)||(8479652-8479955)
chr4 (160-315)||(52190276-52190431)
chr4 (159-289)||(52189184-52189314)
chr4 (154-296)||(30829920-30830062)
chr4 (180-315)||(31409332-31409464)
chr4 (165-255)||(23545316-23545406)
chr4 (161-243)||(41774644-41774726)
chr4 (164-265)||(8480905-8481006)
chr4 (161-242)||(41780233-41780314)
chr4 (161-265)||(31410568-31410671)
chr4 (365-449)||(31409546-31409629)
[»] scaffold0115 (4 HSPs)
scaffold0115 (161-463)||(4336-4638)
scaffold0115 (161-463)||(12076-12378)
scaffold0115 (161-265)||(6037-6141)
scaffold0115 (161-265)||(13777-13881)
[»] chr8 (11 HSPs)
chr8 (158-311)||(17864626-17864779)
chr8 (161-315)||(32565541-32565695)
chr8 (161-242)||(5005708-5005789)
chr8 (161-242)||(5014804-5014885)
chr8 (161-278)||(17863466-17863583)
chr8 (162-266)||(3872242-3872346)
chr8 (161-232)||(12887715-12887786)
chr8 (161-227)||(12888239-12888305)
chr8 (161-265)||(12887024-12887128)
chr8 (161-243)||(37241028-37241110)
chr8 (159-315)||(3870766-3870922)
[»] chr7 (8 HSPs)
chr7 (161-265)||(45291910-45292014)
chr7 (161-265)||(45296035-45296139)
chr7 (161-296)||(41739622-41739757)
chr7 (161-247)||(38516620-38516706)
chr7 (163-265)||(42537718-42537820)
chr7 (161-222)||(38517751-38517812)
chr7 (162-215)||(40601829-40601882)
chr7 (152-205)||(40600702-40600755)
[»] chr3 (11 HSPs)
chr3 (161-315)||(36163383-36163537)
chr3 (161-255)||(11137912-11138006)
chr3 (161-268)||(9099560-9099667)
chr3 (161-265)||(18912548-18912652)
chr3 (161-268)||(20997633-20997740)
chr3 (369-465)||(37464715-37464808)
chr3 (161-229)||(18939847-18939915)
chr3 (160-295)||(36164503-36164638)
chr3 (157-265)||(37464945-37465053)
chr3 (161-315)||(19801786-19801938)
chr3 (161-250)||(20998983-20999072)
[»] chr6 (9 HSPs)
chr6 (161-315)||(18191746-18191900)
chr6 (160-265)||(9448723-9448828)
chr6 (159-310)||(30758784-30758935)
chr6 (160-295)||(18192932-18193067)
chr6 (161-310)||(31855651-31855800)
chr6 (161-295)||(11020315-11020449)
chr6 (160-261)||(226120-226221)
chr6 (161-222)||(9447607-9447668)
chr6 (162-279)||(11020178-11020295)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 162 - 467
Target Start/End: Original strand, 16727813 - 16728118
Alignment:
Q  162 agtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtta 261  Q
    ||||||||||||||||  || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  16727813 agtaaaccctcatttgggtcgctgaaagtgtacctcgctatcagccacgttcctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgtta 16727912  T
Q  262 gtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtccgttacatatgtcatttcaactgttatattggcttttcacgtagacgagtg 361  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||| ||| || |||| |||||||| ||||||| ||||||||| || |    
T  16727913 gtcaaatgcatccaaaacattaacttgatgttaacggtgctgatgtgtccgttacacatgccacttcagctgttatactggctttccacgtagacaaggg 16728012  T
Q  362 actaaaatgaccagaattatgttcttgtcttcatcttctccaacaccaccaattacttcttcttctccaacacaactcataaactcattttgtccaacat 461  Q
    || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16728013 accaaaatgaccagaattatgttcttgtcttcatcttctccaacacctccaattacttcttcttctccaacacaactcataaactcattttgtccaacat 16728112  T
Q  462 ctctgc 467  Q
    ||||||    
T  16728113 ctctgc 16728118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 296
Target Start/End: Original strand, 38921455 - 38921590
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||||||||  |||||||||||||  ||| ||||||| ||| |||||  |||||  ||| |||| |||||||||| |||||  ||||  |||    
T  38921455 gagtaaaccctcatttgggtccctgaaagtgttgctcactatcaggcacatccctagatcaatgaaatgaaccaaaaactcccccaatgattgtttcgtt 38921554  T
Q  261 agtcaaatgcatccaaaatattaacttgatgttaac 296  Q
    ||||||||||||||||||  |||||||| |||||||    
T  38921555 agtcaaatgcatccaaaacgttaacttggtgttaac 38921590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 161 - 296
Target Start/End: Complemental strand, 35968757 - 35968622
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    ||||||||||| | ||| ||||||||||||||   |||||||||| ||| | | |  |||||  |||||||| |||||||||| ||||   |||| ||||    
T  35968757 gagtaaacccttaattggatccctgaaagtgttgttcgctatcaggcacattcatagatcaatgaaacgaaccaaaaactcccccaattattgttttgtt 35968658  T
Q  261 agtcaaatgcatccaaaatattaacttgatgttaac 296  Q
    ||||||||||||||||||  |||||||| |||||||    
T  35968657 agtcaaatgcatccaaaacgttaacttggtgttaac 35968622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 35967351 - 35967453
Alignment:
Q  164 taaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgttagt 263  Q
    |||||||||||||| ||||||||||||  || ||| |||||| ||| |||  |||||||  |||| ||| |||||||||| |||||| ||||| ||||||    
T  35967351 taaaccctcatttggatccctgaaagttcacatcgttatcagccacatcctcgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttagt 35967450  T
Q  264 caa 266  Q
    |||    
T  35967451 caa 35967453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 16306801 - 16306720
Alignment:
Q  234 aaaaactccctcaatgtctgttctgttagtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtccgtta 315  Q
    ||||||| ||| ||||| |||| ||||||||||||||||| ||||  ||||||||  |||||| | | ||||||||| ||||    
T  16306801 aaaaacttccttaatgtatgttatgttagtcaaatgcatctaaaacgttaacttggagttaacggcgctgatgtgtctgtta 16306720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 160 - 467
Target Start/End: Original strand, 36573961 - 36574268
Alignment:
Q  160 agagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgt 259  Q
    ||||||||| |||||||   |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  36573961 agagtaaacactcatttaggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttccgt 36574060  T
Q  260 tagtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtccgttacatatgtcatttcaactgttatattggcttttcacgtagacgag 359  Q
    |||||||||||||||||||  ||||||||||| |||| ||| |||||||||||||||| ||| || |||| |||||||||||||||| ||||||||||||    
T  36574061 tagtcaaatgcatccaaaacgttaacttgatgctaacggtgctgatgtgtccgttacacatgccacttcagctgttatattggctttccacgtagacgag 36574160  T
Q  360 tgactaaaatgaccagaattatgttcttgtcttcatcttctccaacaccaccaattacttcttcttctccaacacaactcataaactcattttgtccaac 459  Q
     ||| |||||||||| |||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  36574161 ggaccaaaatgaccaaaattatgttcttgttttcatcttctccaacacctccaattacttcatcttctccaacacaactcataaactcattttgtacaac 36574260  T
Q  460 atctctgc 467  Q
    ||||||||    
T  36574261 atctctgc 36574268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 161 - 463
Target Start/End: Original strand, 26529508 - 26529809
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26529508 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtttgttctgtt 26529607  T
Q  261 agtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtccgttacatatgtcatttcaactgttatattggcttttcacgtagacgagt 360  Q
    ||||||||||||||||||  |||||||||||||||| ||| |||| ||||||||||| ||  || |||| ||||| || ||||||| |||||||  |||     
T  26529608 agtcaaatgcatccaaaacgttaacttgatgttaacggtgctgatttgtccgttacacataccacttcagctgttgta-tggctttccacgtaggtgagg 26529706  T
Q  361 gactaaaatgaccagaattatgttcttgtcttcatcttctccaacaccaccaattacttcttcttctccaacacaactcataaactcattttgtccaaca 460  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  26529707 gaccaaaatgaccagaattatgttcttgtcttcatcatctccaacacctccaattacttcttcttctccaaaacaactcataaactcattctgtccaaca 26529806  T
Q  461 tct 463  Q
    |||    
T  26529807 tct 26529809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 160 - 467
Target Start/End: Original strand, 49917388 - 49917693
Alignment:
Q  160 agagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgt 259  Q
    ||||||||| ||||||||  || |||||||| || |||||||| |||||| ||| || |||||   || |||||||||||||||  | ||| || |||||    
T  49917388 agagtaaactctcatttgggtctctgaaagtatagctcgctat-agtcacatccttggatcaatttaatgaactaaaaactcccgtattgtttgatctgt 49917486  T
Q  260 tagtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtccgttacatatgtcatttcaactgttatattggcttttcacgtagacgag 359  Q
    |||||||||||||||||||| |||||||||||||||  ||||||| |||||||||||| ||| || |||| ||| | | ||||| || |||||| |||||    
T  49917487 tagtcaaatgcatccaaaatgttaacttgatgttaatggtgttgacgtgtccgttacacatgccacttcagctgctttgttggccttccacgtaaacgag 49917586  T
Q  360 tgactaaaatgaccagaattatgttcttgtcttcatcttctccaacaccaccaattacttcttcttctccaacacaactcataaactcattttgtccaac 459  Q
     ||| |||||||||||||||||||||||| || ||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  49917587 -gaccaaaatgaccagaattatgttcttgcctccatcttctcaaacacctccaattccttcttcttctccaacacaactcataaactcattttatccaac 49917685  T
Q  460 atctctgc 467  Q
    ||||||||    
T  49917686 atctctgc 49917693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 52302762 - 52302909
Alignment:
Q  8 tcaattttatgtgaaaaataaattattttgatattttagataatttgtataagaaataaattgttgtgttgtagtttagtgaaagacgtgaatttcggtt 107  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||| || ||||||||| |||| ||||||||||||||||||| | |||||||| |    
T  52302762 tcaattttctgtgaacaataaattattttgatattttagataatttgtacaataaataaattattgtattgtagtttagtgaaagacataaatttcgg-t 52302860  T
Q  108 tttctgtatccaaccccacaatttatcctagaacaattttataattaaa 156  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  52302861 tttctgtatgcaaccccacagtttatcctagaacaattttataattaaa 52302909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 160 - 265
Target Start/End: Complemental strand, 36575599 - 36575494
Alignment:
Q  160 agagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgt 259  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||||| ||||||||||||||| ||    
T  36575599 agagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagacacgtccttaaatcaagaaaacgaaccaaaaacttcctcaatgtctgttccgt 36575500  T
Q  260 tagtca 265  Q
    ||||||    
T  36575499 tagtca 36575494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 26531151 - 26531047
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    ||||||||||||||||   ||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |    
T  26531151 gagtaaaccctcattttggtccctgaaagtgtacctcgctattagacacgtccctgaatcaagaaaacgaaccaaaaactccctcaatgtctcttctgct 26531052  T
Q  261 agtca 265  Q
    |||||    
T  26531051 agtca 26531047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 159 - 296
Target Start/End: Complemental strand, 35063685 - 35063548
Alignment:
Q  159 tagagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctg 258  Q
    |||||||||||||||||||  || ||||||||||  ||| ||||||| ||| || ||  |||||  |||||||| |||||||||| ||||   ||||  |    
T  35063685 tagagtaaaccctcatttgggtctctgaaagtgttgctcactatcaggcacatctctagatcaatgaaacgaaccaaaaactcccccaattattgtttcg 35063586  T
Q  259 ttagtcaaatgcatccaaaatattaacttgatgttaac 296  Q
    ||||||||||||||||||||  |||||||| |||||||    
T  35063585 ttagtcaaatgcatccaaaacgttaacttggtgttaac 35063548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 26530501 - 26530573
Alignment:
Q  160 agagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaac 232  Q
    |||||||||| |||||||  |||||||||||||||||||||||||  || ||||||| ||||||||| |||||    
T  26530501 agagtaaaccttcatttgggtccctgaaagtgtacctcgctatcaaacatgtccctggatcaagaaatcgaac 26530573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 36574955 - 36575027
Alignment:
Q  160 agagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaac 232  Q
    |||||||||  |||||||  |||||||||||||||||||||||||  || ||||||| ||||||||| |||||    
T  36574955 agagtaaactttcatttgggtccctgaaagtgtacctcgctatcaaacatgtccctggatcaagaaatcgaac 36575027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 49919762 - 49919671
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtct 252  Q
    |||||||| ||||||||  ||| ||||||||| | |||||||||||||| |||||| |||||  ||||| || |||||||||| ||| ||||    
T  49919762 gagtaaactctcatttgggtccttgaaagtgtgcatcgctatcagtcacttccctggatcaatgaaacgcaccaaaaactcccccaaagtct 49919671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 35062564 - 35062668
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    ||||||||| |||||||  | ||| |||||  |||||| |||||  ||| ||||||||||||  |||| ||| |||||||||| |||||| ||||| |||    
T  35062564 gagtaaaccttcatttgggttcctaaaagttcacctcgttatcaaccacatccctgaatcaattaaactaaccaaaaactcccccaatgtttgttccgtt 35062663  T
Q  261 agtca 265  Q
    |||||    
T  35062664 agtca 35062668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 33937062 - 33937034
Alignment:
Q  27 aaattattttgatattttagataatttgt 55  Q
    |||||||||||||||||||||||||||||    
T  33937062 aaattattttgatattttagataatttgt 33937034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 158 - 467
Target Start/End: Complemental strand, 36669219 - 36668910
Alignment:
Q  158 atagagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttct 257  Q
    |||||||||||||| ||||| |||| |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36669219 atagagtaaaccctaatttggatccatgaaagtgcacctcgctatcagccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtctgttct 36669120  T
Q  258 gttagtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtccgttacatatgtcatttcaactgttatattggcttttcacgtagacg 357  Q
    |||||||||||||||||||||  |||||||||| ||||| ||| |||||||| ||||||| ||| || |||| ||| | |||||||||| || |||||||    
T  36669119 gttagtcaaatgcatccaaaacgttaacttgatattaacggtgatgatgtgttcgttacacatgccacttcagctgctgtattggctttccatgtagacg 36669020  T
Q  358 agtgactaaaatgaccagaattatgttcttgtcttcatcttctccaacaccaccaattacttcttcttctccaacacaactcataaactcattttgtcca 457  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36669019 agggaccaaaatgaccagaattatgttcttgtcttcatcttctccaacacctccaattacttcttcttctccaacacaactcataaactcattctgtcca 36668920  T
Q  458 acatctctgc 467  Q
    |||| |||||    
T  36668919 acatttctgc 36668910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 159 - 467
Target Start/End: Complemental strand, 31622168 - 31621860
Alignment:
Q  159 tagagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctg 258  Q
    ||||||||||||| |||||  ||||||||||||||||||| |||||  |||||||||||||||||||||| ||||||||||||||||||||| ||||| |    
T  31622168 tagagtaaacccttatttgggtccctgaaagtgtacctcgttatcaaccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtttgttccg 31622069  T
Q  259 ttagtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtccgttacatatgtcatttcaactgttatattggcttttcacgtagacga 358  Q
    || |||||||||||||||||  ||||||||||| |||| ||| || ||||||| ||||| ||| || |||| |||||||||||||||| |||||||||||    
T  31622068 tttgtcaaatgcatccaaaacgttaacttgatgctaacggtgctggtgtgtccattacacatgccacttcagctgttatattggctttccacgtagacga 31621969  T
Q  359 gtgactaaaatgaccagaattatgttcttgtcttcatcttctccaacaccaccaattacttcttcttctccaacacaactcataaactcattttgtccaa 458  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31621968 gggaccaaaatgaccagaattatgttcttgtcttcatcttctccaacacctccaattacttcttcttctccaacacaactcataaacacattttgtccaa 31621869  T
Q  459 catctctgc 467  Q
    |||||||||    
T  31621868 catctctgc 31621860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 31620525 - 31620629
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||||||||  ||||||||||||||||||||||||||  |||||| |||||||||||||||||| |||||||| |||||||||||||| |||    
T  31620525 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagatacgtccttgaatcaagaaaacgaaccaaaaactcgctcaatgtctgttccgtt 31620624  T
Q  261 agtca 265  Q
    |||||    
T  31620625 agtca 31620629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 160 - 329
Target Start/End: Original strand, 4753527 - 4753696
Alignment:
Q  160 agagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgt 259  Q
    ||||||||||||| ||||  |||||||||||||  ||||||||||| |  ||||||| |||||  ||| |||  ||||||||||||||||| |||| |||    
T  4753527 agagtaaaccctcgtttgggtccctgaaagtgtctctcgctatcagaccagtccctggatcaattaaatgaatcaaaaactccctcaatgtatgttttgt 4753626  T
Q  260 tagtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtccgttacatatgtcatttca 329  Q
    |||||||||||||||||||  |||||||| ||||||| | | |||||||||  ||| | |||||||||||    
T  4753627 tagtcaaatgcatccaaaacgttaacttggtgttaacggcgctgatgtgtctattaaacatgtcatttca 4753696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 40894932 - 40894828
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||  ||||||||| |||||  ||||||||||||||||||| |||||||| ||| |||    
T  40894932 gagtaaaccctcatttggatccctaaaagtgtacctcgctatcaggtacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 40894833  T
Q  261 agtca 265  Q
    |||||    
T  40894832 agtca 40894828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 35306172 - 35306066
Alignment:
Q  159 tagagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctg 258  Q
    ||||||||||||||||||   |||||||||||||||||||||||||  || ||||||||||||||||||||||  ||||||||||  || |||| |||||    
T  35306172 tagagtaaaccctcatttaggtccctgaaagtgtacctcgctatcaaacatgtccctgaatcaagaaaacgaaaaaaaaactccccgaaagtctcttctg 35306073  T
Q  259 ttagtca 265  Q
    |||||||    
T  35306072 ttagtca 35306066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 35298556 - 35298638
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccc 243  Q
    |||||||||||||||||  | |||||||||||||||||||||||  ||||||||||||||||||||||| |  ||||||||||    
T  35298556 gagtaaaccctcatttgggttcctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactccc 35298638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 160 - 265
Target Start/End: Original strand, 36666200 - 36666306
Alignment:
Q  160 agagtaaaccctcatttgcatccct-gaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctg 258  Q
    |||||||||||| |||||  || || ||||||||||||||| || || ||| |  ||||||||||||||||||||||||||| ||||||||||||||| |    
T  36666200 agagtaaacccttatttgggtcacttgaaagtgtacctcgcaattagacacatttctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccg 36666299  T
Q  259 ttagtca 265  Q
    |||||||    
T  36666300 ttagtca 36666306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 465
Target Start/End: Complemental strand, 40894694 - 40894596
Alignment:
Q  365 aaaatgaccagaattatgttcttgtcttcatcttctccaacaccaccaattacttcttcttctccaacacaactcataaactcattttgtccaacatctc 464  Q
    |||||||||| |||||||||  |  ||||||||||||||||||| | |||| ||||||||||||||| |||||||  |||||||| || ||||| |||||    
T  40894694 aaaatgaccataattatgttactaccttcatcttctccaacacctctaatttcttcttcttctccaaaacaactc--aaactcatattctccaatatctc 40894597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 31621174 - 31621102
Alignment:
Q  160 agagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaac 232  Q
    |||||||||| |||||||  ||||| |||||||||||||||||||  || ||||||| ||||||||| |||||    
T  31621174 agagtaaaccttcatttgggtccctaaaagtgtacctcgctatcaaacatgtccctggatcaagaaatcgaac 31621102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 4755094 - 4755043
Alignment:
Q  164 taaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccct 215  Q
    ||||||||||||||  || |||||||||| |||||||||||| |||||||||    
T  4755094 taaaccctcatttgggtctctgaaagtgtccctcgctatcagacacgtccct 4755043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 40893244 - 40893305
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaa 222  Q
    |||||||||||||||| | ||| ||||||||   ||||||||||| ||| ||||||||||||    
T  40893244 gagtaaaccctcattttcgtccttgaaagtgacactcgctatcagacacatccctgaatcaa 40893305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 7e-50; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 162 - 463
Target Start/End: Original strand, 8479652 - 8479955
Alignment:
Q  162 agtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaac-tccctcaatgtctgttctgtt 260  Q
    |||||| |||||||||  |||||||||||||| || |||||||| ||||| |||| ||||| | |||| || |||||| |||| ||| |||| ||| |||    
T  8479652 agtaaatcctcatttgggtccctgaaagtgtatcttgctatcagccacgttcctggatcaatacaacgcaccaaaaacctcccccaaagtctcttccgtt 8479751  T
Q  261 agtcaaatgcatccaaaatattaacttgatg-ttaacagtgttgatgtgtccgttacatatgtcatttcaactgttatattggcttttcacgtagacgag 359  Q
    |||||  | |||||||||| |||||| |||  ||||| ||  |||||||||||||||| ||| ||  |||  |||| ||||||  || ||||||||||||    
T  8479752 agtcatttccatccaaaatgttaact-gatcattaacggtaatgatgtgtccgttacacatgccacctcagttgttgtattggtcttccacgtagacgag 8479850  T
Q  360 tgactaaaatgaccagaattatgttcttgtcttcatcttctccaacaccaccaattacttcttcttctccaacacaactcataaactca-ttttgtccaa 458  Q
     ||| ||||||| ||||||||||||| || ||||||||||||||||||  |||||| |||||||||||||||||||||||| ||||||| ||||||||||    
T  8479851 ggaccaaaatgatcagaattatgttcctgccttcatcttctccaacacttccaattccttcttcttctccaacacaactcagaaactcatttttgtccaa 8479950  T
Q  459 catct 463  Q
    |||||    
T  8479951 catct 8479955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 160 - 315
Target Start/End: Complemental strand, 52190431 - 52190276
Alignment:
Q  160 agagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgt 259  Q
    ||||||||||||||||||  |||||||||||| | ||||||||||| ||  ||| || |||||  |||||||| |||||||||| ||||||||||| |||    
T  52190431 agagtaaaccctcatttgggtccctgaaagtgcatctcgctatcagccagatccatggatcaattaaacgaaccaaaaactcccccaatgtctgttttgt 52190332  T
Q  260 tagtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtccgtta 315  Q
    |||||||||||||||||||  |||||||| ||||||  ||| ||||||||||||||    
T  52190331 tagtcaaatgcatccaaaacgttaacttggtgttaaatgtgctgatgtgtccgtta 52190276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 159 - 289
Target Start/End: Original strand, 52189184 - 52189314
Alignment:
Q  159 tagagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctg 258  Q
    |||||||||||||||||||  |||||||||||| ||||||||||||| ||| |||||| |||||  |||| ||  |||||||| |||||||| ||||| |    
T  52189184 tagagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaatcaaaaactcgctcaatgtatgttccg 52189283  T
Q  259 ttagtcaaatgcatccaaaatattaacttga 289  Q
    ||||||||||||||||||||  |||||||||    
T  52189284 ttagtcaaatgcatccaaaacgttaacttga 52189314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 154 - 296
Target Start/End: Original strand, 30829920 - 30830062
Alignment:
Q  154 aaatatagagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctg 253  Q
    ||||| ||||||||||||||||||  |||||||||||||  ||||||||||| ||| |||||  |||||  |||||||| |||||||||| |||||  ||    
T  30829920 aaataaagagtaaaccctcatttgggtccctgaaagtgttgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattg 30830019  T
Q  254 ttctgttagtcaaatgcatccaaaatattaacttgatgttaac 296  Q
    ||  |||||||||||||||||||||  |||||||| |||||||    
T  30830020 tttcgttagtcaaatgcatccaaaacgttaacttggtgttaac 30830062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 180 - 315
Target Start/End: Original strand, 31409332 - 31409464
Alignment:
Q  180 tccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgttagtcaaatgcatccaaaat 279  Q
    |||||||||||| ||||||||||||  ||||||| || |||||  |||||||| |||||||||||||   ||||||| |||||||||||||||||||||     
T  31409332 tccctgaaagtgcacctcgctatcaaccacgtccttggatcaaataaacgaaccaaaaactccctca---tctgttccgttagtcaaatgcatccaaaac 31409428  T
Q  280 attaacttgatgttaacagtgttgatgtgtccgtta 315  Q
     |||||||| ||||||| ||| ||||||||| ||||    
T  31409429 gttaacttggtgttaacggtgctgatgtgtcggtta 31409464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 23545406 - 23545316
Alignment:
Q  165 aaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgtt 255  Q
    |||||||||||||  ||| ||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  23545406 aaaccctcatttgagtccttgaaagtgtaccttgctatcagacacgtctctgaatcaagaaaacgaaccaaaaactccttcaatgtctgtt 23545316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 41774644 - 41774726
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccc 243  Q
    |||||||| ||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||| |  ||||||||||    
T  41774644 gagtaaactctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactccc 41774726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 265
Target Start/End: Complemental strand, 8481006 - 8480905
Alignment:
Q  164 taaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgttagt 263  Q
    ||||| ||||||||  |||||||||||||| |||||||||||||||||||||| |||||  ||||| || |||||||||| ||| |||| ||| ||||||    
T  8481006 taaactctcatttgagtccctgaaagtgtatctcgctatcagtcacgtccctggatcaatgaaacgcaccaaaaactcccccaaagtctcttccgttagt 8480907  T
Q  264 ca 265  Q
    ||    
T  8480906 ca 8480905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 41780314 - 41780233
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactcc 242  Q
    |||||||||||||||||  || ||||||||||||||||||||||  ||||| ||||||||||||||||| |  |||||||||    
T  41780314 gagtaaaccctcatttgggtctctgaaagtgtacctcgctatcaaccacgttcctgaatcaagaaaacgcaaaaaaaactcc 41780233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 31410671 - 31410568
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    ||||||||||| ||||   | |||||||||| ||||||||||||| ||||| ||||||||||  |||||||  ||||||| ||||||| ||||||| |||    
T  31410671 gagtaaacccttatttaggttcctgaaagtgcacctcgctatcagacacgttcctgaatcaattaaacgaatcaaaaact-cctcaatatctgttccgtt 31410573  T
Q  261 agtca 265  Q
    |||||    
T  31410572 agtca 31410568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 31409546 - 31409629
Alignment:
Q  365 aaaatgaccagaattatgttcttgtcttcatcttctccaacaccaccaattacttcttcttctccaacacaactcataaactcat 449  Q
    |||||||||| ||||||||||| | ||||||||||| |||  || |||||| |||| ||||||||||||| | ||||||||||||    
T  31409546 aaaatgaccacaattatgttct-gccttcatcttcttcaatgcctccaattccttcatcttctccaacactattcataaactcat 31409629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 161 - 463
Target Start/End: Original strand, 4336 - 4638
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||| |||| |||||| ||||||||  |||||||||| |||||||||  |||||  ||||| || |||||||||| ||| |||| |||  ||    
T  4336 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaaagtctcttccatt 4435  T
Q  261 agtcaaatgcatccaaaatattaacttgat-gttaacagtgttgatgtgtccgttacatatgtcatttcaactgttatattggcttttcacgtagacgag 359  Q
    |||||    |||||||||  |||| ||||| |||||| ||| |||||||||||||||| ||| ||  |||  || | ||||||| || | ||||||||||    
T  4436 agtcattcccatccaaaacgttaa-ttgatcgttaacggtgctgatgtgtccgttacacatgccacctcagttgctgtattggccttccgcgtagacgag 4534  T
Q  360 tgactaaaatgaccagaattatgttcttgtcttcatcttctccaacaccaccaattacttcttcttctccaacacaactcataaactcattttgtccaac 459  Q
     ||| ||||||| ||||||||||||| || ||||||||||||||| ||  |||||| |||||||||||||||||||||| | ||||||||||||||||||    
T  4535 ggaccaaaatgatcagaattatgttcatgccttcatcttctccaaaacttccaattccttcttcttctccaacacaactaacaaactcattttgtccaac 4634  T
Q  460 atct 463  Q
    ||||    
T  4635 atct 4638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 161 - 463
Target Start/End: Original strand, 12076 - 12378
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||| |||| |||||| ||||||||  |||||||||| |||||||||  |||||  ||||| || |||||||||| ||| |||| |||  ||    
T  12076 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaaagtctcttccatt 12175  T
Q  261 agtcaaatgcatccaaaatattaacttgat-gttaacagtgttgatgtgtccgttacatatgtcatttcaactgttatattggcttttcacgtagacgag 359  Q
    |||||    |||||||||  |||| ||||| |||||| ||| |||||||||||||||| ||| ||  |||  || | ||||||| || | ||||||||||    
T  12176 agtcattcccatccaaaacgttaa-ttgatcgttaacggtgctgatgtgtccgttacacatgccacctcagttgctgtattggccttccgcgtagacgag 12274  T
Q  360 tgactaaaatgaccagaattatgttcttgtcttcatcttctccaacaccaccaattacttcttcttctccaacacaactcataaactcattttgtccaac 459  Q
     ||| ||||||| ||||||||||||| || ||||||||||||||| ||  |||||| |||||||||||||||||||||| | ||||||||||||||||||    
T  12275 ggaccaaaatgatcagaattatgttcatgccttcatcttctccaaaacttccaattccttcttcttctccaacacaactaacaaactcattttgtccaac 12374  T
Q  460 atct 463  Q
    ||||    
T  12375 atct 12378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 6141 - 6037
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||||||||  |||||||||||||||||||||||||| | |||||||  || ||  ||||| || |||||||||| |||  ||| |||||||    
T  6141 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaaaatctcttctgtt 6042  T
Q  261 agtca 265  Q
    |||||    
T  6041 agtca 6037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 13881 - 13777
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||||||||  |||||||||||||||||||||||||| | |||||||  || ||  ||||| || |||||||||| |||  ||| |||||||    
T  13881 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaaaatctcttctgtt 13782  T
Q  261 agtca 265  Q
    |||||    
T  13781 agtca 13777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 158 - 311
Target Start/End: Complemental strand, 17864779 - 17864626
Alignment:
Q  158 atagagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttct 257  Q
    ||||||||||||||||||||  ||| |||||||| | ||||||||||| ||| |||| | |||||  |||||||| || |||||||||||||||| || |    
T  17864779 atagagtaaaccctcatttggttccttgaaagtgcatctcgctatcagccacatccccggatcaaataaacgaaccaagaactccctcaatgtctatttt 17864680  T
Q  258 gttagtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtcc 311  Q
    ||||||||||||||||||||| ||||||||| ||||||  ||||||||||||||    
T  17864679 gttagtcaaatgcatccaaaacattaacttggtgttaattgtgttgatgtgtcc 17864626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 161 - 315
Target Start/End: Complemental strand, 32565695 - 32565541
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||| |||   ||||||||||||| |||||||||||| |  ||||||  |||||   || |||  |||||||||| ||||||  ||| ||||    
T  32565695 gagtaaaccctcgtttaggtccctgaaagtgtccctcgctatcagaccagtccctcgatcaatttaatgaatcaaaaactcccccaatgtacgttatgtt 32565596  T
Q  261 agtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtccgtta 315  Q
    ||||||||||||||||||  |||||||||||||||| ||| ||||||||||||||    
T  32565595 agtcaaatgcatccaaaacgttaacttgatgttaacggtgctgatgtgtccgtta 32565541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 5005708 - 5005789
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactcc 242  Q
    |||||||||||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||| |  |||||||||    
T  5005708 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactcc 5005789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 5014885 - 5014804
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactcc 242  Q
    |||||||||||||||||  |||||||||||||||||||||||||  ||||||| ||||||||||||||| |  |||||||||    
T  5014885 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccttgaatcaagaaaacgcaaaaaaaactcc 5014804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 278
Target Start/End: Original strand, 17863466 - 17863583
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||||||||  |||||||||||| ||||||||||||| ||| ||| || |||||  |||  ||| |||||||||  |||||| ||||| ||     
T  17863466 gagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccttggatcaattaaataaaccaaaaactcctccaatgtatgttccgtc 17863565  T
Q  261 agtcaaatgcatccaaaa 278  Q
    ||||||||||||||||||    
T  17863566 agtcaaatgcatccaaaa 17863583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 3872346 - 3872242
Alignment:
Q  162 agtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtta 261  Q
    ||||||||||| ||||  |||||||||||| ||||||||||||| |||||||||| |||||  |||||||| |||||||| |||||||  | ||| ||||    
T  3872346 agtaaaccctcgtttgggtccctgaaagtgcacctcgctatcagccacgtccctgtatcaattaaacgaaccaaaaactctctcaatggttattccgtta 3872247  T
Q  262 gtcaa 266  Q
    |||||    
T  3872246 gtcaa 3872242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 12887786 - 12887715
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaac 232  Q
    |||||||||||||||||  |||||||||||||||||||| ||||| ||  |||||| ||||||||| |||||    
T  12887786 gagtaaaccctcatttgggtccctgaaagtgtacctcgcgatcagacatatccctggatcaagaaatcgaac 12887715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 12888305 - 12888239
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaa 227  Q
    ||||||| |||||||||  ||||||||| |||||||||||||||| ||||||||   ||||||||||    
T  12888305 gagtaaatcctcatttgagtccctgaaattgtacctcgctatcagacacgtcccaagatcaagaaaa 12888239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 12887024 - 12887128
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||| |||||||| | |||||||||||||| |||| |  |||||| ||| || || | |||||||||| ||||| || |||||||||| ||  |||    
T  12887024 gagtaaactctcatttgaaaccctgaaagtgtacttcgcaaatagtcacatccatggattaggaaaacgaaccaaaaattctctcaatgtctatttcgtt 12887123  T
Q  261 agtca 265  Q
    |||||    
T  12887124 agtca 12887128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 37241028 - 37241110
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccc 243  Q
    ||||||| |||| ||||  | |||||||||||| ||||||||||||||||| | || |||||  ||||| || ||||||||||    
T  37241028 gagtaaatcctcgtttgggttcctgaaagtgtatctcgctatcagtcacgttcttggatcaatgaaacgcaccaaaaactccc 37241110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 315
Target Start/End: Original strand, 3870766 - 3870922
Alignment:
Q  159 tagagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctg 258  Q
    ||||||||||||||| |||  ||||||||| || |  |||||||||| |||||||||  |||||  || ||||  |||||||||| ||||   ||||| |    
T  3870766 tagagtaaaccctcacttgggtccctgaaaatgcatttcgctatcagccacgtccctagatcaattaagcgaatcaaaaactcccccaatagttgttccg 3870865  T
Q  259 ttagtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtccgtta 315  Q
    |||||||| | | |||||||  |||| ||  ||||||  ||| ||||||||| ||||    
T  3870866 ttagtcaatttcgtccaaaacgttaagttcgtgttaattgtgatgatgtgtcagtta 3870922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 45292014 - 45291910
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||||||||  |||||||||||||||||||||||||| ||| ||||||||||||| || ||||| |||||||||||||| |||| ||| |||    
T  45292014 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaggcacatccctgaatcaaggaatcgaaccaaaaactccctcaaagtctcttccgtt 45291915  T
Q  261 agtca 265  Q
    |||||    
T  45291914 agtca 45291910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 45296139 - 45296035
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||||||||  ||||| |||||||||||||||||||| ||| ||| || |||||| || ||||| |||||||||||||| |||| ||| |||    
T  45296139 gagtaaaccctcatttgggtccctaaaagtgtacctcgctatcaggcacatccatggatcaaggaatcgaaccaaaaactccctcaaagtctcttccgtt 45296040  T
Q  261 agtca 265  Q
    |||||    
T  45296039 agtca 45296035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 296
Target Start/End: Original strand, 41739622 - 41739757
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||||||||  | ||||||||| |  ||||||||||| ||| |||||  |||||  |||||||| |||||||||| |||||  ||||  |||    
T  41739622 gagtaaaccctcatttgggttcctgaaagtattgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgtt 41739721  T
Q  261 agtcaaatgcatccaaaatattaacttgatgttaac 296  Q
    ||||||||||||||||||  |||||||| |||||||    
T  41739722 agtcaaatgcatccaaaacgttaacttggtgttaac 41739757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 38516620 - 38516706
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaa 247  Q
    |||||||||||||||||  ||||||||||||||| |||||||||| ||| |||||| |||||| || | ||| ||||||||||||||    
T  38516620 gagtaaaccctcatttgggtccctgaaagtgtacatcgctatcagacacatccctggatcaaggaatccaaccaaaaactccctcaa 38516706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 42537718 - 42537820
Alignment:
Q  163 gtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgttag 262  Q
    ||||||||||| |||  |||||||||||||  |||||||||||  || ||||||||||||  |||||||| ||||||||||  ||||||| ||| ||| |    
T  42537718 gtaaaccctcagttgggtccctgaaagtgttgctcgctatcaggtacatccctgaatcaatgaaacgaaccaaaaactccccgaatgtctcttccgtttg 42537817  T
Q  263 tca 265  Q
    |||    
T  42537818 tca 42537820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 38517812 - 38517751
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaa 222  Q
    |||||||||||||||||  ||||| ||||| ||| |||||||||| |||||||||| |||||    
T  38517812 gagtaaaccctcatttgagtccctaaaagtatacatcgctatcagacacgtccctggatcaa 38517751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 40601882 - 40601829
Alignment:
Q  162 agtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccct 215  Q
    ||||||||||||||||  ||||||||||||| |||||||||||| ||| |||||    
T  40601882 agtaaaccctcatttgggtccctgaaagtgtgcctcgctatcaggcacatccct 40601829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 40600702 - 40600755
Alignment:
Q  152 ttaaatatagagtaaaccctcatttgcatccctgaaagtgtacctcgctatcag 205  Q
    ||||| ||||||||||||||||||||  ||||||||| ||| |||| |||||||    
T  40600702 ttaaaaatagagtaaaccctcatttgggtccctgaaaatgtgcctctctatcag 40600755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 161 - 315
Target Start/End: Original strand, 36163383 - 36163537
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    ||||||||| ||||||| |||||||||||||| |||||||||||| |   ||||| ||||||   || |||  |||||||||| ||||||  ||| ||||    
T  36163383 gagtaaaccttcatttggatccctgaaagtgtccctcgctatcagaccaatccctcaatcaatttaatgaatcaaaaactcccccaatgtacgttatgtt 36163482  T
Q  261 agtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtccgtta 315  Q
    ||||||||||||||||||  |||||||| ||||||| ||| ||||||||||||||    
T  36163483 agtcaaatgcatccaaaacgttaacttggtgttaacggtgctgatgtgtccgtta 36163537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 161 - 255
Target Start/End: Original strand, 11137912 - 11138006
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgtt 255  Q
    |||||||||||||||||  || || ||| |||||||||||||||| ||| |||||| |||| |||||||||| ||||||||||||||||||||||    
T  11137912 gagtaaaccctcatttggttctctaaaaatgtacctcgctatcagacacatccctggatcatgaaaacgaaccaaaaactccctcaatgtctgtt 11138006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 268
Target Start/End: Original strand, 9099560 - 9099667
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||||||||  ||||| |||||||||||||||||||  ||| ||||||||||||  |||||||| ||||||||  |||||||  |||| |||    
T  9099560 gagtaaaccctcatttgggtcccttaaagtgtacctcgctatcaagcacatccctgaatcaatgaaacgaaccaaaaactctttcaatgttggttccgtt 9099659  T
Q  261 agtcaaat 268  Q
    ||||||||    
T  9099660 agtcaaat 9099667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 18912548 - 18912652
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||||||||  |||||||||||||||||| |||| |  || |||||||||||||||||||| |  ||||||||||| || |||| ||| |||    
T  18912548 gagtaaaccctcatttgggtccctgaaagtgtacctcactattaaccatgtccctgaatcaagaaaacgcaaaaaaaactccctgaaagtctcttccgtt 18912647  T
Q  261 agtca 265  Q
    |||||    
T  18912648 agtca 18912652  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 161 - 268
Target Start/End: Original strand, 20997633 - 20997740
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||||||||  ||||||||| |||||||||||||||  ||| |||| | ||||| ||||| ||| ||||||||| |||||||  |||  |||    
T  20997633 gagtaaaccctcatttgggtccctgaaaatgtacctcgctatcaagcacatcccaggatcaataaaacaaaccaaaaactccttcaatgttggtttcgtt 20997732  T
Q  261 agtcaaat 268  Q
    ||||||||    
T  20997733 agtcaaat 20997740  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 465
Target Start/End: Complemental strand, 37464808 - 37464715
Alignment:
Q  369 tgaccagaattatgttcttgtcttcatcttctccaacaccaccaattacttcttcttctccaacacaactcataaactcattttgtccaacatctct 465  Q
    |||||| |||||||||  |||||||||||||||||||||  |   | | | |||||||||||||||||||||||||||||| || ||||||||||||    
T  37464808 tgaccataattatgttactgtcttcatcttctccaacacatc---tcattccttcttctccaacacaactcataaactcatattctccaacatctct 37464715  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 18939915 - 18939847
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacg 229  Q
    |||||||||||||||||  ||||||||||||||| |||||||||  ||||||||| | |||||||||||    
T  18939915 gagtaaaccctcatttgggtccctgaaagtgtacttcgctatcaaccacgtccctaagtcaagaaaacg 18939847  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 295
Target Start/End: Complemental strand, 36164638 - 36164503
Alignment:
Q  160 agagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgt 259  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||| |  ||||||  ||||| | ||   | ||||||||| ||||||||  |||| ||    
T  36164638 agagtaaaccctcatttgggtccctgaaagtgtccctcgctatcagaccagtccctcgatcaacagaaattattaaaaactctctcaatgttagttccgt 36164539  T
Q  260 tagtcaaatgcatccaaaatattaacttgatgttaa 295  Q
    ||||||| |  ||||||||  |||||||| ||||||    
T  36164538 tagtcaatttaatccaaaacgttaacttggtgttaa 36164503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 37465053 - 37464945
Alignment:
Q  157 tatagagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttc 256  Q
    ||||||||||||||| |||||  |||||||||||||  |||||||||||  || |||||  |||||  |||| ||| ||||||||||| ||||||| |||    
T  37465053 tatagagtaaaccctaatttgggtccctgaaagtgttgctcgctatcaggtacatccctagatcaatgaaacaaaccaaaaactccctgaatgtctcttc 37464954  T
Q  257 tgttagtca 265  Q
     ||| ||||    
T  37464953 cgtttgtca 37464945  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 315
Target Start/End: Original strand, 19801786 - 19801938
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||||||    ||||||||||||||||||||||||||  |||||| |  |||||  |||||||| |||||||||| ||   | || | ||||    
T  19801786 gagtaaaccctcattccggtccctgaaagtgtacctcgctatcagctacgtccttagatcaattaaacgaaccaaaaactccccca--ttttgatttgtt 19801883  T
Q  261 agtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtccgtta 315  Q
    ||||||||  ||||||||  |||||||  ||||||| ||| | |||||| |||||    
T  19801884 agtcaaatttatccaaaacgttaactttgtgttaacggtgctaatgtgtgcgtta 19801938  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 20999072 - 20998983
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgt 250  Q
    ||||||| ||||||||  |||||||||||||||| | | |||||| ||| || |||||||||  ||| ||| |||||||| | |||||||    
T  20999072 gagtaaatcctcatttagatccctgaaagtgtacattgttatcagacacatcactgaatcaatgaaatgaattaaaaacttcttcaatgt 20998983  T

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Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 161 - 315
Target Start/End: Original strand, 18191746 - 18191900
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||||||||  ||||||||||||| || ||||||||| |  |||||| ||||||   || |||  |||||||||| |||||| |||| ||||    
T  18191746 gagtaaaccctcatttgggtccctgaaagtgtcccacgctatcagaccagtccctcaatcaatttaatgaatcaaaaactcccccaatgtatgttatgtt 18191845  T
Q  261 agtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtccgtta 315  Q
    ||||||||||||||||||  |||||||| | ||||  ||| ||||||||||||||    
T  18191846 agtcaaatgcatccaaaacgttaacttggtattaatggtgctgatgtgtccgtta 18191900  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 160 - 265
Target Start/End: Complemental strand, 9448828 - 9448723
Alignment:
Q  160 agagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgt 259  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| ||| |||||| |||||| || ||||| |||||||||||||| |||| |||  |    
T  9448828 agagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacatccctggatcaaggaatcgaaccaaaaactccctcaaagtctcttcctt 9448729  T
Q  260 tagtca 265  Q
    ||||||    
T  9448728 tagtca 9448723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 159 - 310
Target Start/End: Complemental strand, 30758935 - 30758784
Alignment:
Q  159 tagagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctg 258  Q
    |||||||||||||||||||  ||| ||||||||| ||||||| |||  | ||||  |  ||||| |||  |||  ||||||||||||||||| |||| ||    
T  30758935 tagagtaaaccctcatttgggtccttgaaagtgtccctcgctgtcacacccgtcatttgatcaataaattgaatcaaaaactccctcaatgtatgttttg 30758836  T
Q  259 ttagtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtc 310  Q
    |||||||||||||||||||| ||||||||| ||||||| ||| | |||||||    
T  30758835 ttagtcaaatgcatccaaaacattaacttggtgttaacggtgcttatgtgtc 30758784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 295
Target Start/End: Complemental strand, 18193067 - 18192932
Alignment:
Q  160 agagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgt 259  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||| |  ||||||  ||||| | ||   | ||||||||||||||||||  |||||||    
T  18193067 agagtaaaccctcatttgggtccctgaaagtgtccctcgctatcaggccagtccctcgatcaacataaattattaaaaactccctcaatgttagttctgt 18192968  T
Q  260 tagtcaaatgcatccaaaatattaacttgatgttaa 295  Q
    ||||||| |  ||||||||  |||||||| ||||||    
T  18192967 tagtcaatttaatccaaaacgttaacttggtgttaa 18192932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 161 - 310
Target Start/End: Original strand, 31855651 - 31855800
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||| |||||||| |||  |||||||||  ||||||||||| |  || ||||||||||   || |||  ||||||||||  ||||| |||| ||||    
T  31855651 gagtaaactctcatttgaatctttgaaagtgtctctcgctatcagaccagttcctgaatcaatttaatgaatcaaaaactcccctaatgtatgttatgtt 31855750  T
Q  261 agtcaaatgcatccaaaatattaacttgatgttaacagtgttgatgtgtc 310  Q
    ||||||||| |||||||| ||||| ||| ||||||| ||| |||||||||    
T  31855751 agtcaaatgtatccaaaacattaatttggtgttaacggtgctgatgtgtc 31855800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 161 - 295
Target Start/End: Complemental strand, 11020449 - 11020315
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtt 260  Q
    |||||||||||||||||  ||||||||||||| |||||||||||| |   |||||  ||||| | ||   | ||||||||||||||||||  ||||  ||    
T  11020449 gagtaaaccctcatttgggtccctgaaagtgtccctcgctatcagaccaatccctcgatcaacagaaattattaaaaactccctcaatgttagttccatt 11020350  T
Q  261 agtcaaatgcatccaaaatattaacttgatgttaa 295  Q
    |||||| |  ||||||||| |||||||| ||||||    
T  11020349 agtcaatttaatccaaaatgttaacttggtgttaa 11020315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 226120 - 226221
Alignment:
Q  160 agagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgt 259  Q
    ||||||||||||||||||  ||| ||||||||| |||||||||||| ||| ||| || | |||| ||||| |  ||||||||||| || |||| ||||||    
T  226120 agagtaaaccctcatttgggtccttgaaagtgtgcctcgctatcaggcacatccatggaacaaggaaacgcaaaaaaaactccctgaaagtctcttctgt 226219  T
Q  260 ta 261  Q
    ||    
T  226220 ta 226221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 9447607 - 9447668
Alignment:
Q  161 gagtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaa 222  Q
    ||||||||||| |||||  | ||||||||| ||||||| |||||| ||||||||||||||||    
T  9447607 gagtaaacccttatttgagttcctgaaagtatacctcgttatcagacacgtccctgaatcaa 9447668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 279
Target Start/End: Original strand, 11020178 - 11020295
Alignment:
Q  162 agtaaaccctcatttgcatccctgaaagtgtacctcgctatcagtcacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttctgtta 261  Q
    ||||||| ||||||||  ||||||||||||| |||| ||||||| |  |||||| |||||| | ||   | ||||||||||||||||||  |||| ||||    
T  11020178 agtaaactctcatttgggtccctgaaagtgtccctcactatcagaccagtccctcaatcaacagaaattattaaaaactccctcaatgttagttccgtta 11020277  T
Q  262 gtcaaatgcatccaaaat 279  Q
    ||||| |  |||||||||    
T  11020278 gtcaatttaatccaaaat 11020295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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