View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6227_low_10 (Length: 438)
Name: NF6227_low_10
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6227_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Original strand, 34008255 - 34008656
Alignment:
| Q |
16 |
ctgtgatgaccttctcgtgatctctttagaatttgtgacacggcgcttaaaagttaacttatatattcaattgaagtattggtagatggaaccaatctta |
115 |
Q |
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| T |
34008255 |
ctgtgatgaccttctcgt---ctctttagaatttgtgacacagcgcttaaaagttaacttatatattcaattgaagttttggtagatggaaccaatctta |
34008351 |
T |
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| Q |
116 |
tgatggtcttgttatgaaagaaaatgttatctgtttttatcaataatcttaaaatgataatagtgtttgatcatgtttggtaaacaatcttaaattgaaa |
215 |
Q |
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| T |
34008352 |
tgatggtcttgttatgaaagaaaatgttatctgtttttatcaataatcttaaaatgataatagtgtttgatcatgtttggtaaacaatcttaaattgaaa |
34008451 |
T |
|
| Q |
216 |
ggttggaaagagagagagaaatctttctttctcttttaggattaggggagtgctaatcaggggtgtcaatgccaacttatgtgatgagttatttcagaat |
315 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34008452 |
ggttggaaagag----agaaatctttctttctcttttaggattaggggagtgctaatcaggggtgtcaatgccaacttatgtgatgagttatttcagaat |
34008547 |
T |
|
| Q |
316 |
tcttcttagcatttgtgacagaattgagagagtcatttgtaggttttggtggggagggaaggaatgaagagaacaggaaaatccattgctgtttcatgga |
415 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34008548 |
tcttcttagcatttgtgacagaattgagagagtgatttgtaggttttggtggggagggagggaatgaagagaacaggaaaatccattgctgtttcatgga |
34008647 |
T |
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| Q |
416 |
tgttgtttt |
424 |
Q |
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| T |
34008648 |
tgttgtttt |
34008656 |
T |
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