View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6227_low_11 (Length: 420)
Name: NF6227_low_11
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6227_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 41561793 - 41561398
Alignment:
| Q |
18 |
agtgtgtccatattttcacacccttttggtaaacctgcttctacacaaggaaaaggtagtaattgaaattggattttaaggtttgatgattttgcttgat |
117 |
Q |
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| T |
41561793 |
agtgtgtccatattttcacacccttttggtaaacctgcttctacacaaggaaaaggtagtaattgaaattggattttaaggtttgatgattttgcttgat |
41561694 |
T |
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| Q |
118 |
caatgaccatgttgaaccttgcagcattaaggggtgtgagaacaatggtaactgtgacaccatttgatgcaaacaatttggccatttctgtgaaaggaat |
217 |
Q |
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| T |
41561693 |
caatgaccatgttgaaccttgcagcattaaggggtgtgagaacaatggtaactgtgacaccatttgatgcaaacaatttggccatttctgtgaaaggaat |
41561594 |
T |
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| Q |
218 |
gagatggctttgagacattaatggaatgagaagaaagtgttgctggttagtttgggaagccattggaaaataaactaatgttaaggatgagatgatgnnn |
317 |
Q |
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| T |
41561593 |
gagatggctttgagacattaatggaatgagaagaaagtgttgctggttagtttgggaagccattggaaaataaactaatgttaaggatgagatgatgaaa |
41561494 |
T |
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| Q |
318 |
nnnngtgaagttttagttggttcaatttaagttagaaaagaatatgaagaataaagttnnnnnnngtatgatattgtgggggcaatctttcttttc |
413 |
Q |
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| T |
41561493 |
aaaagtgaagttttagttggttcaatttaagttagaaaagaatatgaagaataaagttaaaaaaagtatgatattgtgggggcaatctttcttttc |
41561398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 113 - 349
Target Start/End: Complemental strand, 46656431 - 46656191
Alignment:
| Q |
113 |
ttgatcaatgaccatgttgaaccttgcagcattaaggggtg-tgagaacaatggtaactgtgacaccatttgatgcaaacaatttggccat---ttctgt |
208 |
Q |
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| T |
46656431 |
ttgatcaatgaccatgttgaaccttgcagcattaagggggggtgagaacaatggtaacagtgacaccatttgatgcaaacaatttggccatttattatgt |
46656332 |
T |
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| Q |
209 |
gaaaggaatgagatggctttgagacattaatggaatgagaagaaagtgttgctggttagtttggg-aagccattggaaaataaactaatgttaaggatga |
307 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||| || ||||||||||||| ||||||| |||||||||||| ||||||||| ||| |
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| T |
46656331 |
gaaaggaatgagatggctttgagacataaatggaatgagaaggaagt-ctgttggttagtttgggaaagccatgggaaaataaactgatgttaagggtga |
46656233 |
T |
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| Q |
308 |
gatgatgnnnnnnngtgaagttttagttggttcaatttaagt |
349 |
Q |
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| T |
46656232 |
gatgatgaaaaaaagtgaagttttagttagctcaatttaagt |
46656191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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