View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6227_low_12 (Length: 407)
Name: NF6227_low_12
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6227_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 291
Target Start/End: Original strand, 10508106 - 10508388
Alignment:
| Q |
9 |
agcacagagctttggacttccctatctaagtccatatcttaattctcttgggtctaatttcacatatggtgcaaacttcgcaacagcaggatcaacaatc |
108 |
Q |
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| T |
10508106 |
agcacggagctttcgacttccctatctaagtccatatcttaattctcttgggtctaacttcacacatggtgcaaacttcgcatcaggaggatcaacaatc |
10508205 |
T |
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| Q |
109 |
aatatccctgaaagtattctacctaatggaatactcagtccattttctcttcaaattcaatacattcaattcaaagagttcatatcgaaaacaaaactca |
208 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10508206 |
aatatccctaaaagtattctacctaatggaaaactcagtccattttctcttcaaattcaatacattcaattcaaagagttcatatcgaaaacaaaactca |
10508305 |
T |
|
| Q |
209 |
ttagagatcaaggtaaattaaaatatgttttccattgttttatgatatcttttggtggttctaagtttaaataaggatataca |
291 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10508306 |
ttagagatcaaggtaaattaaaatatgttttccatttttttatgatatcttttggtggttctaagtttaaataaggatataca |
10508388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 10502400 - 10502679
Alignment:
| Q |
9 |
agcacagagctttggacttccctatctaagtccatatcttaattctcttgggtctaatttcacatatggtgcaaacttcgcaacagcaggatcaacaatc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
10502400 |
agcacagagctttggacttccctatctaagtccatatcttaattctcttgggtctaacttcacacatggtgcaaacttcgcaacaggaggatcaacaatc |
10502499 |
T |
|
| Q |
109 |
aatatccctgaaagtattctacctaatggaatactcagtccattttctcttcaaattcaatacattcaattcaaagagttcatatcgaaaacaaaactca |
208 |
Q |
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| T |
10502500 |
aatatccctaatagtattatacctaatgggatatttagtccattttctcttcaaattcagtacattcaattcaaagatttcatatccaaaacaaatctca |
10502599 |
T |
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| Q |
209 |
ttagagatcaaggtaaattaaaatatgttttccattgtttt--atgatatcttttggtggttctaagtttaaataaggata |
287 |
Q |
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|| | ||||||||||||||||||||| ||| || ||||||| ||||||||||||||| ||| ||||||| |||||||| |
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| T |
10502600 |
ttcgggatcaaggtaaattaaaatat-tttcccgttgttttcgttgatatcttttggtgattccgagtttaattaaggata |
10502679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 10499460 - 10499680
Alignment:
| Q |
9 |
agcacagagctttggacttccctatctaagtccatatcttaattctcttgggtctaatttcacatatggtgcaaacttcgcaacagcaggatcaacaatc |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||| ||||||||| |
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| T |
10499460 |
agcacaaagctttggacttccctatctaagtccatatcttaattctctggggtcaaatttcacacatggtgcaaactttgcaacagcagggtcaacaatc |
10499559 |
T |
|
| Q |
109 |
aatatccctgaaagtattctacctaatggaatactcagtccattttctcttcaaattcaatacattcaattcaaagagttcatatcgaaaacaaaactca |
208 |
Q |
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|| || ||| | |||||| ||||||||||||| | ||||||||||| ||||||||||| | ||||||||||||||| |||||| | ||| ||||| ||| |
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| T |
10499560 |
aaaattcctaatagtattatacctaatggaatgtttagtccattttcccttcaaattcagtccattcaattcaaagatttcataccaaaagcaaaattca |
10499659 |
T |
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| Q |
209 |
ttagagatcaaggtaaattaa |
229 |
Q |
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|||| |||||||||||||||| |
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| T |
10499660 |
ttagggatcaaggtaaattaa |
10499680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 10485082 - 10485300
Alignment:
| Q |
9 |
agcacagagctttggacttccctatctaagtccatatcttaattctcttgggtctaatttcacatatggtgcaaacttcgcaacagcaggatcaacaatc |
108 |
Q |
| |
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||||||||||||||||||||||| ||| |||||||| ||||||||||| || | || |||||| |||||| |||||| |||||||||| ||||||||| |
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| T |
10485082 |
agcacagagctttggacttccctttcttagtccataccttaattctctcggacccaacttcacacatggtgtaaactttgcaacagcagcgtcaacaatc |
10485181 |
T |
|
| Q |
109 |
aatatccctgaaagtattctacctaatggaatactcagtccattttctcttcaaattcaatacattcaattcaaagagttcatatcgaaaacaaaactca |
208 |
Q |
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|| || ||| | |||||| ||||||||||||| |||||||||||| |||| |||||| ||||||||||||| ||| |||||| | | ||||||| ||| |
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| T |
10485182 |
aaaattcctaatagtattatacctaatggaatgttcagtccattttaccttcgaattcagtacattcaattcagagatttcatacccagaacaaaattca |
10485281 |
T |
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| Q |
209 |
ttagagatcaaggtaaatt |
227 |
Q |
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|||| ||||||||| |||| |
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| T |
10485282 |
ttagggatcaaggtcaatt |
10485300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 10508443 - 10508486
Alignment:
| Q |
346 |
gcaacgttgatacccaaagaagattatttctccaaagccttata |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10508443 |
gcaacgttgatacccaaagaagattatttctccaaagccttata |
10508486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 10485405 - 10485445
Alignment:
| Q |
346 |
gcaacgttgatacccaaagaagattatttctccaaagcctt |
386 |
Q |
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||||||||||| ||||||||||| ||||| ||||||||||| |
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| T |
10485405 |
gcaacgttgatccccaaagaagaatatttttccaaagcctt |
10485445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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