View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6227_low_15 (Length: 375)

Name: NF6227_low_15
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6227_low_15
NF6227_low_15
[»] chr4 (10 HSPs)
chr4 (1-366)||(24986036-24986401)
chr4 (35-366)||(25000762-25001091)
chr4 (104-366)||(25046542-25046804)
chr4 (277-349)||(25168726-25168798)
chr4 (277-349)||(25252468-25252540)
chr4 (276-358)||(25160164-25160246)
chr4 (275-358)||(25180392-25180475)
chr4 (278-349)||(25189340-25189411)
chr4 (285-366)||(25017633-25017714)
chr4 (285-366)||(25038740-25038821)
[»] chr3 (2 HSPs)
chr3 (275-349)||(9213708-9213782)
chr3 (280-346)||(8091587-8091653)
[»] chr2 (1 HSPs)
chr2 (280-365)||(42167210-42167295)
[»] chr8 (1 HSPs)
chr8 (169-220)||(4633222-4633273)
[»] chr6 (2 HSPs)
chr6 (277-349)||(29406212-29406284)
chr6 (277-325)||(29460043-29460091)


Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 24986036 - 24986401
Alignment:
Q  1 ctttcccttctattacagaagatcaagtctcatgttatttgaatttcaggacataaagatttcagtgccgaatttgaataatattttgcttttaaaaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24986036 ctttcccttctattacagaagatcaagtctcatgttatttgaatttcaggacataaagatttcagtgccgaatttgaataatatttttcttttaaaaaca 24986135  T
Q  101 gaagacctgatatttggtcttgtatagttttgtagcagcagcatgagcaagaagttggtagtgtgcagtcaaatatggttcggtccctgaatcgcctcct 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24986136 gaaaacctgatatttggtcttgtatagttttgtagcagcagcatgagcaagaagttggtagtgtgcagtcaaatatggctcggtccctgaatcgcctcct 24986235  T
Q  201 gtgcaattcagatttaaccaatctgaacatcgacccggtgcaaactttccatatgcataagcattcatgctcacactccatggttcattcaaagtaatcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24986236 gtgcaattcagatttaaccaatctgaacatcgacccggtgcaaactttccatatgcataagcattcatgctcacactccatggttcattcaaagtaatcc 24986335  T
Q  301 aatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatcatctctgc 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24986336 aatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatcatctctgc 24986401  T

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Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 35 - 366
Target Start/End: Complemental strand, 25001091 - 25000762
Alignment:
Q  35 ttatttgaatttcaggacataaagatttcagtgccgaatttgaataatattttgcttttaaaaacagaagacctgatatttggtcttgtatagttttgta 134  Q
    |||||||||||||| |||||||||||   ||| |||||||||||||| |||||| |||||||| |||  ||||||||||||||||  ||| ||||||  |    
T  25001091 ttatttgaatttcaagacataaagatca-agttccgaatttgaataacattttggttttaaaa-cagcggacctgatatttggtccggtacagttttaca 25000994  T
Q  135 gcagcagcatgagcaagaagttggtagtgtgcagtcaaatatggttcggtccctgaatcgcctcctgtgcaattcagatttaaccaatctgaacatcgac 234  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  25000993 gcagcagcatgagcgagaagttggtagtgtgcagccaaatatggttcggtccctgaatcaccacctgtgcaattcagatttaaccaatctgaacatcgac 25000894  T
Q  235 ccggtgcaaactttccatatgcataagcattcatgctcacactccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagca 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  25000893 ccggtgcaaactttccatatgcataagcattcatgctcacactccatggttcattcaaagtaatccaatgtttcaccctatcgccaaattccttgaagca 25000794  T
Q  335 aagttcagcatagtccttaaaatcatctctgc 366  Q
    |||||||||||||||| |||||||||||||||    
T  25000793 aagttcagcatagtccctaaaatcatctctgc 25000762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 104 - 366
Target Start/End: Original strand, 25046542 - 25046804
Alignment:
Q  104 gacctgatatttggtcttgtatagttttgtagcagcagcatgagcaagaagttggtagtgtgcagtcaaatatggttcggtccctgaatcgcctcctgtg 203  Q
    ||||||||| ||||||||||| | ||||  ||| |||| ||||||||||||||||||||| | ||||| ||||||||| ||||| ||||| |||||||||    
T  25046542 gacctgatacttggtcttgtacaattttacagctgcagaatgagcaagaagttggtagtgcgaagtcagatatggttctgtcccagaatctcctcctgtg 25046641  T
Q  204 caattcagatttaaccaatctgaacatcgacccggtgcaaactttccatatgcataagcattcatgctcacactccatggttcattcaaagtaatccaat 303  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||   ||| ||  ||||| | |||||||||| |||||||||||||||| |||||     
T  25046642 caattcagttttaaccaatctgaacatcgacccggtgcaaaccttccgactgcgtatccattcttactcacactccttggttcattcaaagtagtccaac 25046741  T
Q  304 gtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatcatctctgc 366  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||    
T  25046742 gtttcaccctatcaccaaattccttgaagcaaagatcagcatagtccttaaaatcatttctgc 25046804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 349
Target Start/End: Original strand, 25168726 - 25168798
Alignment:
Q  277 tccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtc 349  Q
    ||||||||||||||||||| ||||||||||| || ||||| ||||||   ||| |||||||||| ||||||||    
T  25168726 tccatggttcattcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagttccgcatagtc 25168798  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 349
Target Start/End: Complemental strand, 25252540 - 25252468
Alignment:
Q  277 tccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtc 349  Q
    ||||||||||||||||||| ||||||||||| || ||||| ||||||   ||| |||||||||| ||||||||    
T  25252540 tccatggttcattcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagttccgcatagtc 25252468  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 358
Target Start/End: Original strand, 25160164 - 25160246
Alignment:
Q  276 ctccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatc 358  Q
    |||||||| || |||||||||| |||||  || || |||||||||||||||||| | |||||||| |||||||| | ||||||    
T  25160164 ctccatggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatc 25160246  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 25180392 - 25180475
Alignment:
Q  275 actccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatc 358  Q
    ||||||||| ||||||||||| ||||||||||| || ||||| ||||||   ||  |||||||||| |||||||| | ||||||    
T  25180392 actccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatc 25180475  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 349
Target Start/End: Original strand, 25189340 - 25189411
Alignment:
Q  278 ccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtc 349  Q
    ||||||||| || ||||||| ||| |  ||||| ||||| |||||||||||| ||||||| |||||||||||    
T  25189340 ccatggttcgttaaaagtaacccagtacttcactctatctccaaattccttgaagcaaagatcagcatagtc 25189411  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 25017633 - 25017714
Alignment:
Q  285 tcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatcatctctgc 366  Q
    ||||| || ||||||||||| ||||| |  || |||||||||||| |||| || || |||||||||| |||||||| |||||    
T  25017633 tcattgaaggtaatccaatgcttcactcggtctccaaattccttgaagcatagctcggcatagtcctgaaaatcatttctgc 25017714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 25038740 - 25038821
Alignment:
Q  285 tcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatcatctctgc 366  Q
    ||||| || ||||||||||| ||||| ||||| || ||||||||| |||| || || |||||||| | |||||||| |||||    
T  25038740 tcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctgc 25038821  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 349
Target Start/End: Complemental strand, 9213782 - 9213708
Alignment:
Q  275 actccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtc 349  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||  |||||||||||||||||||    
T  9213782 actccatggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcatagtc 9213708  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 346
Target Start/End: Complemental strand, 8091653 - 8091587
Alignment:
Q  280 atggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcata 346  Q
    ||||||||||||| ||||||||||| || ||||| |||||||||||  || |||| ||||| |||||    
T  8091653 atggttcattcaatgtaatccaatgcttaaccctgtcaccaaattcactgaagcatagttctgcata 8091587  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 365
Target Start/End: Original strand, 42167210 - 42167295
Alignment:
Q  280 atggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatcatctctg 365  Q
    |||| ||||| |||||||||||||  ||||||||||| ||||| || ||| | |||||||| |||||||| | |||||||| ||||    
T  42167210 atggctcattgaaagtaatccaatacttcaccctatctccaaactctttgaaacaaagttccgcatagtcttgaaaatcatttctg 42167295  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 4633222 - 4633273
Alignment:
Q  169 tcaaatatggttcggtccctgaatcgcctcctgtgcaattcagatttaacca 220  Q
    ||||||||||||| ||||||||||| ||||||  |||||||| |||||||||    
T  4633222 tcaaatatggttctgtccctgaatcacctcctaagcaattcatatttaacca 4633273  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 349
Target Start/End: Complemental strand, 29406284 - 29406212
Alignment:
Q  277 tccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtc 349  Q
    ||||||| || ||||| || |||||||| ||||||||||| || |||||||| || ||||| || ||||||||    
T  29406284 tccatggctcgttcaatgtgatccaatgcttcaccctatctccgaattccttataacaaagctctgcatagtc 29406212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 29460043 - 29460091
Alignment:
Q  277 tccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattc 325  Q
    |||||||||||||||| || |||||||| || |||||||| ||||||||    
T  29460043 tccatggttcattcaatgtgatccaatgctttaccctatctccaaattc 29460091  T

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