View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6227_low_17 (Length: 356)

Name: NF6227_low_17
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6227_low_17
NF6227_low_17
[»] chr1 (3 HSPs)
chr1 (162-252)||(39997031-39997121)
chr1 (18-83)||(39996887-39996952)
chr1 (272-349)||(39997116-39997192)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 39997031 - 39997121
Alignment:
Q  162 atctattttgatattataagctgtttgcataaactatattagaaaatttatgaacacaagtagaaaatagtttatatatgtaatttcaaat 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39997031 atctattttgatattataagctgtttgcataaactatattagaaaatttatgaacacaagtagaaaatagtttatatatgtaatttcaaat 39997121  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 39996887 - 39996952
Alignment:
Q  18 atgtatgatgtcgtttttggctctattgagataacattttaattaacataagtatttattcctttt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39996887 atgtatgatgtcgtttttggctctattgagataacattttaattaacataagtatttattcctttt 39996952  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 272 - 349
Target Start/End: Original strand, 39997116 - 39997192
Alignment:
Q  272 tcaaatccatttttgtgatccaagaacatataccctatgtaactttgtggataatgttatgttacttccttcatctca 349  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  39997116 tcaaatccatttttgtgatccaagaacatatacc-tatgtaactttgtggataatgttatgttacttccttcgtctca 39997192  T

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