View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6227_low_19 (Length: 319)
Name: NF6227_low_19
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6227_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 16426717 - 16427020
Alignment:
| Q |
1 |
tccgtcaaagccgaaacggagccattaaaagagctcaatggacagtggagataattcaaaaactacaaactcatcaccacgtaataaggttgaagagcca |
100 |
Q |
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| T |
16426717 |
tccgtcaaagccgaaacggagccattaaaagagctcaatggacagtggagataattcaaaaactacaaactcatcaccacgtaataaggttgaagagcca |
16426816 |
T |
|
| Q |
101 |
caatggaaaatatttaacggcaacagaaacaccgtatcccttaaccctaacaggaaaaagggtaatattaacggagttagaaaacggtgtagatggtaaa |
200 |
Q |
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| T |
16426817 |
caacggaaaatatttaacgtcaacagaaacaccgtatcccttaaccctaacaggaaaaagggtaatattaacggagttagaaaacggtgtagatggtaaa |
16426916 |
T |
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| Q |
201 |
aacgaatggcaaccaatacgtgacgggtttcaggtaaagctgaggagttgttgtgggaggtttttgaagggaaacggtagtaatccgccgtggaggaaca |
300 |
Q |
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| T |
16426917 |
aacgaatggcaaccaatacgtgacgggtttcaggtaaagctgaggagttgttgtgggaggtttttgaagggaaacggtagtaatccgccgtggaggaaca |
16427016 |
T |
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| Q |
301 |
gtgt |
304 |
Q |
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|||| |
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| T |
16427017 |
gtgt |
16427020 |
T |
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