View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6227_low_2 (Length: 643)

Name: NF6227_low_2
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6227_low_2
NF6227_low_2
[»] chr3 (4 HSPs)
chr3 (482-632)||(52675862-52676013)
chr3 (293-394)||(52675691-52675793)
chr3 (35-101)||(52675456-52675522)
chr3 (144-220)||(52675539-52675615)
[»] chr8 (2 HSPs)
chr8 (357-408)||(1838421-1838472)
chr8 (348-400)||(473503-473555)
[»] chr5 (2 HSPs)
chr5 (348-409)||(1243001-1243062)
chr5 (360-400)||(6689905-6689945)
[»] chr7 (2 HSPs)
chr7 (352-408)||(1824586-1824642)
chr7 (357-408)||(41521003-41521054)
[»] chr1 (1 HSPs)
chr1 (343-397)||(23920803-23920857)
[»] chr6 (1 HSPs)
chr6 (352-408)||(6632744-6632800)
[»] chr4 (1 HSPs)
chr4 (348-408)||(3607936-3607996)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 3e-68; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 482 - 632
Target Start/End: Original strand, 52675862 - 52676013
Alignment:
Q  482 atatggagattcccacgtcacgtggaatatctagaaccacgtgcttaatctatattattatcatatctcatctcatccacaaaaatctggctagagctca 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52675862 atatggagattcccacgtcacgtggaatatctagaaccacgtgcttaatctatattattatcatatctcatctcatccacaaaaatctggctagagctca 52675961  T
Q  582 aacccaacggatatttccaac-atcttcatctatgtaataataattcttcat 632  Q
    ||| |||||||||||| |||| ||||||||||||| ||||||||||||||||    
T  52675962 aacacaacggatatttgcaacaatcttcatctatgcaataataattcttcat 52676013  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 293 - 394
Target Start/End: Original strand, 52675691 - 52675793
Alignment:
Q  293 gacaattaaggaaatatttccaattatagaagattttaaaatggcaatggctc-tcaaaagctgccaaatgacaaacttgtcaaaatactaaatttgctt 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| |||||||| ||||||| |||||||||||    
T  52675691 gacaattaaggaaatatttccaattatagaagattttaaaatggcaatggctctttaaaagctgtcaaatggcaaacttgccaaaatattaaatttgctt 52675790  T
Q  392 tat 394  Q
    |||    
T  52675791 tat 52675793  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 52675456 - 52675522
Alignment:
Q  35 aaaacgttttcaaggagaagcgtaagaagcaagtgaaaaatcacatagaaaatgcattgagtttaat 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52675456 aaaacgttttcaaggagaagcgtaagaagcaagtgaaaaatcacatagaaaatgcattgagtttaat 52675522  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 52675539 - 52675615
Alignment:
Q  144 cagcggtcattcagttgaattgcattgagaaccaccgnnnnnnncatagtaaatcaggaaatcattaaaaagctggt 220  Q
    |||||||||||||||||||||||||||||||||||||       ||| |||||||||||||||||||||||||||||    
T  52675539 cagcggtcattcagttgaattgcattgagaaccaccgtttttctcatcgtaaatcaggaaatcattaaaaagctggt 52675615  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 1838421 - 1838472
Alignment:
Q  357 caaatgacaaacttgtcaaaatactaaatttgctttattattatttatagat 408  Q
    |||||| |||||||| ||||||||||| |||||||||||||||| |||||||    
T  1838421 caaatggcaaacttgccaaaatactaagtttgctttattattatctatagat 1838472  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 400
Target Start/End: Original strand, 473503 - 473555
Alignment:
Q  348 aaaagctgccaaatgacaaacttgtcaaaatactaaatttgctttattattat 400  Q
    ||||| || ||||||||||||||| ||||| |||||| |||||||||||||||    
T  473503 aaaagatgacaaatgacaaacttgccaaaacactaaacttgctttattattat 473555  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 1243001 - 1243062
Alignment:
Q  348 aaaagctgccaaatgacaaacttgtcaaaatactaaatttgctttattattatttatagata 409  Q
    ||||| || ||||||||||||||  ||||||| ||| |||||||||||||||| ||||||||    
T  1243001 aaaagatgacaaatgacaaacttaccaaaatattaagtttgctttattattatctatagata 1243062  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 6689905 - 6689945
Alignment:
Q  360 atgacaaacttgtcaaaatactaaatttgctttattattat 400  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  6689905 atgacaaacttgccaaaatactaagtttgctttattattat 6689945  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 352 - 408
Target Start/End: Original strand, 1824586 - 1824642
Alignment:
Q  352 gctgccaaatgacaaacttgtcaaaatactaaatttgctttattattatttatagat 408  Q
    |||| |||||| || ||||||||||||||| | |||||||||||||||| |||||||    
T  1824586 gctgacaaatggcatacttgtcaaaatacttagtttgctttattattatctatagat 1824642  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 408
Target Start/End: Complemental strand, 41521054 - 41521003
Alignment:
Q  357 caaatgacaaacttgtcaaaatactaaatttgctttattattatttatagat 408  Q
    |||||| |||||||| |||||||||||| || |||||||||||| |||||||    
T  41521054 caaatggcaaacttgccaaaatactaaacttcctttattattatctatagat 41521003  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 23920803 - 23920857
Alignment:
Q  343 ctctcaaaagctgccaaatgacaaacttgtcaaaatactaaatttgctttattat 397  Q
    |||| ||||| || |||||| |||||||| ||||||||||| |||||||||||||    
T  23920803 ctcttaaaagatgacaaatggcaaacttgccaaaatactaagtttgctttattat 23920857  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 6632800 - 6632744
Alignment:
Q  352 gctgccaaatgacaaacttgtcaaaatactaaatttgctttattattatttatagat 408  Q
    |||| |||||||||  |||||||||||||| |  ||||||||||||||| |||||||    
T  6632800 gctgacaaatgacaggcttgtcaaaatactgagcttgctttattattatctatagat 6632744  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 3607936 - 3607996
Alignment:
Q  348 aaaagctgccaaatgacaaacttgtcaaaatactaaatttgctttattattatttatagat 408  Q
    ||||| || ||||||||||||||| ||||||| | | |||| ||||||||||| |||||||    
T  3607936 aaaagatgacaaatgacaaacttgccaaaataatgagtttgttttattattatctatagat 3607996  T

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