View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6227_low_20 (Length: 304)

Name: NF6227_low_20
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6227_low_20
NF6227_low_20
[»] chr4 (5 HSPs)
chr4 (1-73)||(34484341-34484413)
chr4 (55-125)||(34493035-34493105)
chr4 (208-296)||(26982154-26982239)
chr4 (96-170)||(48205299-48205377)
chr4 (255-296)||(48205432-48205473)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 34484413 - 34484341
Alignment:
Q  1 tgattactagtaaagaattaaatgactcaaatttaaattaaagtcactgttaagcttatatttaagtgcaatg 73  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  34484413 tgattactagtgaagaattaaatgactcaaatttaaattaaagtcacagttaagtttatattgaagtgcaatg 34484341  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 34493105 - 34493035
Alignment:
Q  55 cttatatttaagtgcaatggtgtacaaagagatgcatatatatagcaaaatgaacaaagagtataagaaat 125  Q
    |||||||| |||||||||||||||||||||||||||||||||  |||||||||||||| || ||| |||||    
T  34493105 cttatattgaagtgcaatggtgtacaaagagatgcatatataaggcaaaatgaacaaaaagcatatgaaat 34493035  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 26982154 - 26982239
Alignment:
Q  208 ataccaacacaggcaccaccccaagttcagtcatcaactttggtgtgaccttgacaacttgtttagccaacatttcaatatcctttgct 296  Q
    ||||||| ||||||||||||| ||||||||||||||||||   | ||||||| ||| |||||||||||| ||| |||||||| ||||||    
T  26982154 ataccaatacaggcaccacccgaagttcagtcatcaactt---tctgaccttaacatcttgtttagccagcatctcaatatcttttgct 26982239  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 48205299 - 48205377
Alignment:
Q  96 atagcaaaatgaacaaagagtataagaaatctgaaac----ttacatgtaacttccatgagctaactggatcaaagctt 170  Q
    ||||| ||||||||||| |  ||||||||||||||||    ||||||||||||||||| ||||| ||||||||||||||    
T  48205299 atagccaaatgaacaaaaaacataagaaatctgaaacataattacatgtaacttccattagctagctggatcaaagctt 48205377  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 48205432 - 48205473
Alignment:
Q  255 accttgacaacttgtttagccaacatttcaatatcctttgct 296  Q
    ||||||||| ||| |||||||||||||||| |||||||||||    
T  48205432 accttgacatcttctttagccaacatttcagtatcctttgct 48205473  T

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