View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6227_low_21 (Length: 298)
Name: NF6227_low_21
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6227_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 280
Target Start/End: Complemental strand, 23830448 - 23830173
Alignment:
| Q |
5 |
tatatattatctaccaacaatgttctcacattagcaggagaattcaaacatggatcatgagttaaatctttatcaactgaaccaacttgaatttacgtac |
104 |
Q |
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| T |
23830448 |
tatatattatctaccaacaatgttctcacatcagcagtagaattcaaacatgggtcatgagttaaatctttatcaactgaaccaacttgaatttacgtac |
23830349 |
T |
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| Q |
105 |
gcatttgaatatnnnnnnnntactaaactaacttgttagtccaagtgataaatatcttaatttccttcaataaagttcaaaatgtaggtcttcgaataaa |
204 |
Q |
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| T |
23830348 |
gcatttgaatataaaaaaaatactaaactaacttgttagtccaagtgataaatatcttaatttccttcaataaagttcaaaatgtaggtcttcgaataaa |
23830249 |
T |
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| Q |
205 |
attgttaatagagttgtctcttttaagtgggttcattttactagtactagtatatttttctcagacacttcgccac |
280 |
Q |
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| T |
23830248 |
attgttaatagagttgtctcttttaagtgggttcattttactagtactagtatatttttctcagacacttcaccac |
23830173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 23821062 - 23821007
Alignment:
| Q |
225 |
ttttaagtgggttcattttactagtactagtatatttttctcagacacttcgccac |
280 |
Q |
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| T |
23821062 |
ttttaagtgggtttattttactggtactagtatacttttctcacactcttcgccac |
23821007 |
T |
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