View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6227_low_28 (Length: 250)
Name: NF6227_low_28
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6227_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 13889653 - 13889802
Alignment:
| Q |
1 |
aaaagtctatttcgtataaacatcattaaataaatagcgtgatttgagtttgaatagactaacgaattaatccatatggccttgttttggacagcgatgg |
100 |
Q |
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| T |
13889653 |
aaaagtctatttcatatgaacatcttcaaataaatagcgtgatttgagtttgaatagactaacgaactaagccatatgaccttattttgggcagcgatgg |
13889752 |
T |
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| Q |
101 |
acatttgagccta--tacccatccaatccaaaatggcaatgggatgcaca |
148 |
Q |
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| T |
13889753 |
acatttgagcttagtgactcatccaatccaaaatggcaatgggatgcaca |
13889802 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 22166141 - 22166077
Alignment:
| Q |
7 |
ctatttcgtataaacatcattaaataaatagcgtgatttgagtttgaatagactaacgaattaat |
71 |
Q |
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| T |
22166141 |
ctatttcatataaacatctttaaataaataatgtgatttaagttttaatcaactaacgaactaat |
22166077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 22224848 - 22224784
Alignment:
| Q |
7 |
ctatttcgtataaacatcattaaataaatagcgtgatttgagtttgaatagactaacgaattaat |
71 |
Q |
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||||||| |||||||||| ||||||||||| ||||||| ||||| ||| ||||||||| |||| |
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| T |
22224848 |
ctatttcatataaacatctttaaataaataatgtgatttaagttttaatcaactaacgaactaat |
22224784 |
T |
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