View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6227_low_3 (Length: 547)
Name: NF6227_low_3
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6227_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Original strand, 34484540 - 34485070
Alignment:
| Q |
1 |
attgcatttaaaatttaagaatctcatattctcctnnnnnnngaatctcatagtcaaaactggttagacttttattccatttttaattcacaaatgtcag |
100 |
Q |
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| T |
34484540 |
attgcatttaaaatttaagaatctcatattctcctaaaaaaagaatctcatagtcaaaactggttagacttttattccatttttaattcacaaatgtcag |
34484639 |
T |
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| Q |
101 |
tgaataatagttaagagagaggtatttgttaacaactgatatcaaataattcacctcctatattaattcttgttcaacttctcaact-attccattgatc |
199 |
Q |
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| T |
34484640 |
tgaataatagttaagagagaggtatttgttaacaactgatatcaaataattcacctcctatattaattcttgttcaacttctcaactcattccattgatc |
34484739 |
T |
|
| Q |
200 |
ctttgctcaataannnnnnnnnn-gaacaggctaaaatgctttgctccataattcaatagtataatcatccttcatctacctaacataaataaactcggt |
298 |
Q |
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| T |
34484740 |
ctttgctcaataatttttttttttgaacaggctaaaatgctttgctccataattcaatagtataatcatccttcatctacctaacataaataaactcggt |
34484839 |
T |
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| Q |
299 |
taacaataaaagtattatttttccnnnnnnnnnnnntgaataaagaattactatttaagcaattaaaaactatcaagtgcgctaaatttgattttgaagg |
398 |
Q |
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| T |
34484840 |
taacaataaaagtattatttttccaaaaaaaaaa--tgaataaagaattactatttaagcaattaaaaactatcaagtgcgccaaatttgattttgaagg |
34484937 |
T |
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| Q |
399 |
tcaatggttattacacctcaacttcaactattgaaggtggaaatgtcaacattggatagcaggatgaagaatgtgtttgtctttacatgttgcaaattaa |
498 |
Q |
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| T |
34484938 |
tcaatggttattacacctcaacttcaactattgaaagtggaaatgtcaacattggatagcaggatgaagaatgtgtttgtctttacatgttgcaaattaa |
34485037 |
T |
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| Q |
499 |
agggataatgctgaggcatgtcaaagtattgca |
531 |
Q |
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| T |
34485038 |
agggataatgctgaggcatgtcaaagtattgca |
34485070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 34490030 - 34490126
Alignment:
| Q |
92 |
aaatgtcagtgaataatagttaagagagaggtat-ttgttaacaactgatatcaaataattcacctcctatattaattcttgttcaacttctcaact |
187 |
Q |
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| T |
34490030 |
aaatgtccgtaattaattgttaagagagatgtatgttgttaacaactgatatcaaataattcacctcctatattaattcttgttaaacgtctcaact |
34490126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 416 - 494
Target Start/End: Original strand, 34480357 - 34480435
Alignment:
| Q |
416 |
tcaacttcaactattgaaggtggaaatgtcaacattggatagcaggatgaagaatgtgtttgtctttacatgttgcaaa |
494 |
Q |
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| T |
34480357 |
tcaacttcaactagtgaaggcagaaatgtcaacattggaaagcaggatgaagaatatgtttgtgtttacatgttgcaaa |
34480435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 521
Target Start/End: Original strand, 34481926 - 34481985
Alignment:
| Q |
462 |
atgaagaatgtgtttgtctttacatgttgcaaattaaagggataatgctgaggcatgtca |
521 |
Q |
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| T |
34481926 |
atgaagaatgtgttagtctttacatgttgcaaattaaggggataatgctgaggcatgtca |
34481985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 34489905 - 34489973
Alignment:
| Q |
2 |
ttgcatttaaaatttaagaatctcatattctcctnnnnnnngaatctcatagtcaaaactggttagactttt |
73 |
Q |
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| T |
34489905 |
ttgcatttaaaatttaagaatctcatattctcctaaaaa---aatctcgtagtcaaaactggttagactttt |
34489973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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