View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6227_low_5 (Length: 515)

Name: NF6227_low_5
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6227_low_5
NF6227_low_5
[»] chr1 (3 HSPs)
chr1 (157-384)||(40115547-40115774)
chr1 (14-87)||(40115844-40115917)
chr1 (448-502)||(40115429-40115483)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 157 - 384
Target Start/End: Complemental strand, 40115774 - 40115547
Alignment:
Q  157 aaactgaaaaaaccaatatcaaagattttcctaatacttctctttcactcaacctttttcattcaatcttttatcatcttcacaagtttcttttcatatt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40115774 aaactgaaaaaaccaatatcaaagattttcctaatacttctctttcactcaacctttttcattcaatcttttatcatcttcacaagtttcttttcatatt 40115675  T
Q  257 caacttctgttgtgaatttcatagcaatctttcttttttaggtctcttcaaataatggtttttctcttttcctttgatttatcctatcccttgggattct 356  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40115674 caacttctgttgtgaattgcatagcaatctttcttttttaggtctcttcaaataatggtttttctcttttcctttgatttatcctatcccttgggattct 40115575  T
Q  357 ttgattcttacacttcctaaatatttcc 384  Q
    ||||||||||||||||||||||||||||    
T  40115574 ttgattcttacacttcctaaatatttcc 40115547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 40115917 - 40115844
Alignment:
Q  14 agggaaacatagaaaagggtaatgatagaagttgtttgttgaagcggagaggtcaagtaactgtaaaatagcag 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40115917 agggaaacatagaaaagggtaatgatagaagttgtttgttgaagcggagaggtcaagtaactgtaaaatagcag 40115844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 448 - 502
Target Start/End: Complemental strand, 40115483 - 40115429
Alignment:
Q  448 atttgatggaccactcttaatttatcatcttggttactttttgtagcatataatt 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40115483 atttgatggaccactcttaatttatcatcttggttactttttgtagcatataatt 40115429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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