View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6227_low_7 (Length: 481)
Name: NF6227_low_7
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6227_low_7 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 20 - 473
Target Start/End: Complemental strand, 4234409 - 4233956
Alignment:
| Q |
20 |
cttcgtttatgtaatccaatggttttgtatcaactaaatgtccccatacacagtttccaaaatagttatttggtagtggtggctctaaccttgctctgca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4234409 |
cttcgtttatgtaatccaatggttttgtatcaactaaatgtccccatacgcagtttccaaaatagttatttggtagtggtggctctaaccttgctctgca |
4234310 |
T |
|
| Q |
120 |
atctacggtgaatgcaaacccaaacttccctttctcattttcaactccatgaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4234309 |
atctacggtgaatgcaaacccaaacttctctttctccttttcaactccatgaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaa |
4234210 |
T |
|
| Q |
220 |
gatgataaagttggtggcttagaatttaattcattcgtgtccaataattcccattttgataatatcatttgctttatcttattcaaatcttcacgtgtga |
319 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
4234209 |
gatgataaagttggtggcttagaagttaattcattcgtgtccaataattcccattttgataataccatttgctttatcttattcaaatcttcacgtgtga |
4234110 |
T |
|
| Q |
320 |
gcttgaatgtagaacgaacatagtcttcgagttttggttcaaaaggtaaaatcttcaagcttctttcatttcctttttcatttgggaacatcatggttat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4234109 |
gcttgaatgtagaacgaacatagtcttcgagttttggttcaaaaggtaaaatcttcaagcttctttcatttcctttttcatttgggaacatcatggttat |
4234010 |
T |
|
| Q |
420 |
tatctccctccagttttttgtgaacttatcaccaagtccgttgtctttgatgat |
473 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
4234009 |
tatctccgtccagttttttgtgaacttatcaccaagtccattgtctttgatgat |
4233956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 232 - 456
Target Start/End: Complemental strand, 4196454 - 4196230
Alignment:
| Q |
232 |
ggtggcttagaatttaattcattcgtgtccaataattcccattttgataatatcatttgctttatcttattcaaatcttcacgtgtgagcttgaatgtag |
331 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
4196454 |
ggtggcttagaatttaattcatttgtgtccaataattcccattttgttaacaccatttgctttatcttgttcaaatcttcacgtgtgagcttgaacgtag |
4196355 |
T |
|
| Q |
332 |
aacgaacatagtcttcgagttttggttcaaaaggtaaaatcttcaagcttctttcatttcctttttcatttgggaacatcatggttattatctccctcca |
431 |
Q |
| |
|
||||| | |||||||||| ||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||| ||||||| | ||| ||||| |
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|
| T |
4196354 |
cacgaagagagtcttcgaggtttggttcaaaagctaaaatcttcaagcatctttcgtttcctttttcatttgggaacatgttggttatgaactctctcca |
4196255 |
T |
|
| Q |
432 |
gttttttgtgaacttatcaccaagt |
456 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
4196254 |
attatttgtgaacttatcaccaagt |
4196230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 61 - 443
Target Start/End: Complemental strand, 4189736 - 4189354
Alignment:
| Q |
61 |
ccccatacacagtttccaaaatagttatttggtagtggtggctctaaccttgctctgcaatctacggtgaatgcaaacccaaacttccctttctcatttt |
160 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||| | | |
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|
| T |
4189736 |
ccccaaacacagtttccaaaatagttacttggtattggtggttctaaccttgctctgcaatctacggtgaaagcaaaagaaaacttttctttctccatat |
4189637 |
T |
|
| Q |
161 |
caactccatgaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaagatgataaagttggtggcttagaatttaattcattcgtgtc |
260 |
Q |
| |
|
| ||| ||||| |||||||| ||||||| || || ||||||||||||||||||||||||||||||||| ||||||| |||| | ||||||| || || |
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|
| T |
4189636 |
ctgctcggtgaatcgcttttgcataacaaacgagtgaataagcacaagtgagaacaaaagatgataaagtttgtggctttgaatatgattcatttgtatc |
4189537 |
T |
|
| Q |
261 |
caataattcccattttgataatatcatttgctttatcttattcaaatcttcacgtgtgagcttgaatgtagaacgaacatagtcttcgagttttggttca |
360 |
Q |
| |
|
| ||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||| |||||||| | |||||| ||||||| |||||||||||| |
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|
| T |
4189536 |
ataaaattcccattttgataacaccatttgctttatcttgttcaaatcttcacgcgtgagattgaatgtggcacgaacggagtcttcaagttttggttca |
4189437 |
T |
|
| Q |
361 |
aaaggtaaaatcttcaagcttctttcatttcctttttcatttgggaacatcatggttattatctccctccagttttttgtgaa |
443 |
Q |
| |
|
|| ||||||| || ||||| ||| ||||||||||| ||||||| ||| ||| ||| ||||| ||||| | |||||||| |
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|
| T |
4189436 |
aagtgtaaaatatttaagctatgttcgtttcctttttcgcttgggaaaatcgtggatatgatctcggtccagctatttgtgaa |
4189354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 4210745 - 4210530
Alignment:
| Q |
20 |
cttcgtttatgtaatccaatggttttgtatcaactaaatgtccccatacacagtttccaaaatagttatttggtagtggtggctctaaccttgctctgca |
119 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4210745 |
cttcatttatgtaatccgatggttttgtatcaaccaaatgtccccatacacaatttccaaaatagttatttggtagtgatggctctaaccttgctctgca |
4210646 |
T |
|
| Q |
120 |
atctacggtgaatgcaaacccaaacttccctttctcattttcaactccatgaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaa |
219 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||| ||| || |||||||||||||||||||||||||||||| | |||| ||| ||||||||||| |
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|
| T |
4210645 |
atctacggtgaatccaaatgcaaacttctctttctccattttaattccatgaattgcttttgccaaacaaacaagggcataagaacatgtgagaacaaac |
4210546 |
T |
|
| Q |
220 |
gatgataaagttggtg |
235 |
Q |
| |
|
||||||||||| |||| |
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|
| T |
4210545 |
gatgataaagtgggtg |
4210530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 38 - 380
Target Start/End: Complemental strand, 4192879 - 4192537
Alignment:
| Q |
38 |
atggttttgtatcaactaaatgtccccatacacagtttccaaaatagttatttggtagtggtggctctaaccttgctctgcaatctacggtgaatgcaaa |
137 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| || ||| ||||| |
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|
| T |
4192879 |
atggttttgtatcaacaaaatgcccccagacacagtttccaaaatagttatttggtattggtggttctaaccttgatctgcaatctatggggaaagcaaa |
4192780 |
T |
|
| Q |
138 |
cccaaacttccctttctcattttcaactccatgaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaagatgataaagttggtggc |
237 |
Q |
| |
|
|||||| ||||||| || || |||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| |||||||| | ||||| |
|
|
| T |
4192779 |
agaaaacttatctttctccttagcagctccatgaatcgcttttgccaaacaaacaagcgaatatgcacaagtgagaacaaaagctgataaagattgtggc |
4192680 |
T |
|
| Q |
238 |
ttagaatttaattcattcgtgtccaataattcccattttgataatatcatttgctttatcttattcaaatcttcacgtgtgagcttgaatgtagaacgaa |
337 |
Q |
| |
|
|| ||||| ||||||| | || | | |||| |||||||| ||| ||||||||||||||| ||||||||||| | ||||| ||||| || | ||||| |
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|
| T |
4192679 |
tttaaatttgattcatttttatcaacaacttccaattttgatgataccatttgctttatcttgatcaaatcttcaagcgtgagattgaacgtggcacgaa |
4192580 |
T |
|
| Q |
338 |
catagtcttcgagttttggttcaaaaggtaaaatcttcaagct |
380 |
Q |
| |
|
| |||||| ||||||||||||||| ||||||| || ||||| |
|
|
| T |
4192579 |
ctgagtctttgagttttggttcaaagtgtaaaatatttaagct |
4192537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 62 - 407
Target Start/End: Complemental strand, 4251377 - 4251038
Alignment:
| Q |
62 |
cccatacacagtttccaaaatagttatttggtagtggtggctctaaccttgctctgcaatctacggtgaatgcaaacccaaacttccctttctcattttc |
161 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| || ||| |||||||||||||||||||||||| |||| |||| ||||||| |||| ||||| | |
|
|
| T |
4251377 |
cccaaacacagtttccaagatagttatttggtattgttggttctaaccttgctctgcaatctacgctgaacacaaaagaaaacttctctttgtcattatg |
4251278 |
T |
|
| Q |
162 |
aactccatgaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaagatgataaagttggtggcttagaatttaattcattcgtgtcc |
261 |
Q |
| |
|
| | |||||||| |||||||| | |||||| ||||| ||||||||||||| ||||| ||||||| |||| ||||| ||| |||| ||||| || |
|
|
| T |
4251277 |
agccccatgaatcgcttttgcaacacaaacgagcgaataagcacaagtgatgacaaatgatgatagagtttgtggc------tttgattctttcgtatcg |
4251184 |
T |
|
| Q |
262 |
aataattcccattttgataatatcatttgctttatcttattcaaatcttcacgtgtgagcttgaatgtagaacgaacatagtcttcgagttttggttcaa |
361 |
Q |
| |
|
|||| ||||||| | ||||| | ||||||||||||||| |||||||||| || ||||||| || |||| ||||||| |||||||||||| |||||||| |
|
|
| T |
4251183 |
aatatttcccatgtagataacactctttgctttatcttatccaaatcttcatgtttgagcttaaaagtagcacgaacagagtcttcgagttgtggttcaa |
4251084 |
T |
|
| Q |
362 |
aaggtaaaatcttcaagcttctttcatttcctttttcatttgggaa |
407 |
Q |
| |
|
| || |||||||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
4251083 |
atgggaaaatctttaagcttctatcatttcctttttcacttgggaa |
4251038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 55 - 397
Target Start/End: Complemental strand, 4246949 - 4246613
Alignment:
| Q |
55 |
aaatgtccccatacacagtttccaaaatagttatttggtagtggtggctctaaccttgctctgcaatctacggtgaatgcaaacccaaacttccctttct |
154 |
Q |
| |
|
||||| ||||| | ||||||||||| ||||||||||| || |||||| | |||||||| || |||||||| | || |||| ||||||||| |||| | |
|
|
| T |
4246949 |
aaatgcccccaaatacagtttccaatatagttatttgctattggtggttttaaccttgtcctacaatctacagcaaacacaaaaccaaacttctctttat |
4246850 |
T |
|
| Q |
155 |
cattttcaactccatgaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaagatgataaagttggtggcttagaatttaattcatt |
254 |
Q |
| |
|
||||| |||| | || |||||||| || | |||||| ||||| |||||||||| ||| ||||| ||||||| | || ||||||| || ||| | |
|
|
| T |
4246849 |
aattttgaacttcgtggattgctttcgcaagacaaactagcgaataagcacaagcgaggacaaacgatgatatattttgtggctttga------ttctct |
4246756 |
T |
|
| Q |
255 |
cgtgtccaataattcccattttgataatatcatttgctttatcttattcaaatcttcacgtgtgagcttgaatgtagaacgaacatagtcttcgagtttt |
354 |
Q |
| |
|
|| || ||| ||||||| ||||||| | | ||||||||||||||| ||||||||| || |||| | || |||| |||||| |||||| ||||||| |
|
|
| T |
4246755 |
tgtatcgaatgtttcccatgttgataacaccctttgctttatcttatccaaatcttcgtgtttgagttcaaaagtagcgcgaacacagtctttgagtttt |
4246656 |
T |
|
| Q |
355 |
ggttcaaaaggtaaaatcttcaagcttctttcatttccttttt |
397 |
Q |
| |
|
||||||||| | ||| |||| |||||||||||||||| ||||| |
|
|
| T |
4246655 |
ggttcaaaatggaaattctttaagcttctttcatttctttttt |
4246613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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