View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6227_low_9 (Length: 465)
Name: NF6227_low_9
Description: NF6227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6227_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 8378208 - 8377769
Alignment:
| Q |
18 |
gaaggttcctagaggctagatggtaaccaaattaatgatttatataagaatcatctttgctaatggtataattcactgcaaagtaaaaagctaattaagc |
117 |
Q |
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| T |
8378208 |
gaaggttcctagaggctagatggtaaccaaattaatgatttatataagaatcatctttgctaatggtataattcactgcaaagtaaaaagctaattaagc |
8378109 |
T |
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| Q |
118 |
tgaatgcagttgctcgattcattgagagaacaagagttgaaaatggagattgaagaagtttgtgaagcacaagcacttccattgctctcattgaatcatg |
217 |
Q |
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| T |
8378108 |
tgaatgcagttgctcgattcattgagagaacaagagttgaaaatggagattgaagaagtttgtgaagcacaagcacttccattgctctcattgaatcatg |
8378009 |
T |
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| Q |
218 |
tgtctttcttgtgtagatcagtgttggagtctatgcaattttatgaggaggttttagattttgttcccatcaaacgaccatcttctttcaaatttactgg |
317 |
Q |
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| T |
8378008 |
tgtctctcttgtgtagatcagtgttggagtctatgcaattttatgaggatgttttaggttttgttcccatcaaacgaccatcttctttcaaatttactgg |
8377909 |
T |
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| Q |
318 |
agcatggttagcttatttttagtaattaatttctttttcatatcaactatcttgctacacaaaatattagtgtacttacatgcttttaatgtannnnnnn |
417 |
Q |
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| T |
8377908 |
agcatggttagcttatttttagtaattaatttctttttcatatcaactatcttgctacacaaaatattagtgtacttacatgcttttaacgt--tatttt |
8377811 |
T |
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| Q |
418 |
nnngtaggttttataattatggtattggaatacattttattc |
459 |
Q |
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| T |
8377810 |
tttgtaggttttataattatggtattggaatacatttgattc |
8377769 |
T |
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