View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6228_high_4 (Length: 347)
Name: NF6228_high_4
Description: NF6228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6228_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 39211510 - 39211183
Alignment:
| Q |
1 |
catagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaactatatagctgatatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39211510 |
catagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaactatatagctgatagc |
39211411 |
T |
|
| Q |
101 |
ataaatttgtttcannnnnnnctacttaaattggatgtaacagctgcagggcaattaacacatgttcttaattgtaacagatgcaggatgaaaattgata |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39211410 |
ataaatttgtttcatttttttctacttaaattggatgtaacagctgcagggcaattgacacatgttcttaattgtaacagatgcaggatgaaaattgata |
39211311 |
T |
|
| Q |
201 |
gcttatgaagtacataactgaagcactgtttttcttatatgcaaagaattgaaaaagttcataagggagaata--atattccaaatctcataattatgag |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
39211310 |
gcttatgaagtacataactgaagcactgtttttcttatatgcaaagaattgaaaaagttcataagggagaataatatattccaaatctcataattataag |
39211211 |
T |
|
| Q |
299 |
aattgatctcagatgcaggaactcaaaa |
326 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39211210 |
aattgatctcagatgcaggaactcaaaa |
39211183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 27509430 - 27509761
Alignment:
| Q |
1 |
catagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaactatatagctgatatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
27509430 |
catagtcataagaaagtataatgtactagagtcaatttcactatgtctaattgaatcttgacaacagatgttgcaggggaaaaactatataactgatagt |
27509529 |
T |
|
| Q |
101 |
ataaatttgtttcannnnnnnctacttaaattggatgtaacagctgcagggcaattaacacatgttcttaattgtaacagatgcaggatgaaaattgata |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27509530 |
ataaatttgtttcatttttttctacttaaattggatgtaacagctgcagggcaattgacacatgttcttaattgtaacagatgcaggatgaaaattgata |
27509629 |
T |
|
| Q |
201 |
gcttatgaagtacataactgaagcactgtttttcttatatgcaaagaattgaaaaagttcataaggg-agaataatattccaaatctcataattatgaga |
299 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27509630 |
gcttatgaagtacataactgaagcactatttttcttatatgcaaagaattgaaaaagttcataagggaagaataatattccaaatctcataattatgaga |
27509729 |
T |
|
| Q |
300 |
attgatctcagatgcaggaactcaaaattgat |
331 |
Q |
| |
|
||| | |||| ||||| ||||||||||||||| |
|
|
| T |
27509730 |
atttaactcatatgcatgaactcaaaattgat |
27509761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 27271981 - 27271646
Alignment:
| Q |
1 |
catagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaactatatagctgatatc |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27271981 |
catagtcataagaaagtataatgtatttaagtctatttcactgtgtctaattgaatcttcacaacagatgttgcagtggaaaaactatatagctgatagt |
27271882 |
T |
|
| Q |
101 |
ataaatttgtttcannnnnnnctacttaaattggatgtaacagctgcagggcaa--ttaaca-catgttcttaattgtaacagatgcagga--tgaaaat |
195 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||||||||||||| | | || || ||| |||||||||||||||||||| || ||||||| |
|
|
| T |
27271881 |
ataaatatgtttcatttttt-ctacctaaattggatgtaacagctgcagtgaatgtttgtcatcatcatcttaattgtaacagatgcaagaactgaaaat |
27271783 |
T |
|
| Q |
196 |
tgatagcttatgaagtacataactgaagcactgtttttcttatatgcaaagaattgaaaaagttcataaggga-gaataatattccaaatctcataatta |
294 |
Q |
| |
|
|||||||||| ||| ||||||| ||| || ||| |||||| ||||||||||||| ||||||||||||||||| |||| ||||| ||||| ||||||||| |
|
|
| T |
27271782 |
tgatagcttaagaaatacataattgaggcgctgagtttcttgtatgcaaagaatttaaaaagttcataagggaagaatgatatttcaaatgtcataatta |
27271683 |
T |
|
| Q |
295 |
tgagaattgatctcagatgcaggaactcaaaattgat |
331 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27271682 |
tgagaattgaattcagatgcaggaactcaaaattgat |
27271646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 2 - 331
Target Start/End: Original strand, 42092965 - 42093300
Alignment:
| Q |
2 |
atagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaactatatagctgatatca |
101 |
Q |
| |
|
||||||||||||| ||||||| || ||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||||||| ||||||| | |
|
|
| T |
42092965 |
atagtcataagaaggtataatatatttaagtctatttcactatgtttaattgaatcttgacaacatgtgctgcagtggaaaaactataaagctgatggta |
42093064 |
T |
|
| Q |
102 |
taaatttgtttcannnnnnnc-tacttaaattggatgtaacagctgcagggcaattaacac--atgttcttaattgtaacagatgcagga--tgaaaatt |
196 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||||| |||||||||| | || |||| | ||||||||||| ||||| || | |||||| |
|
|
| T |
42093065 |
taaatttgtttcatttttttcctactgaaattggatgtaacagccacagggcaattgatactcatgtgcctaattgtaacatatgcatgaactcaaaatt |
42093164 |
T |
|
| Q |
197 |
gatagcttatgaagtacataactgaagcactgtttttcttatatgcaaagaattgaaaaagttcataaggga-gaataatattccaaatctcataattat |
295 |
Q |
| |
|
|||||| | |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
42093165 |
gatagcatttgaagtacataattgaagcactatttttcttatatgcaaagaattgagaaagttcataagggacaaatgatattccaaatctcataattat |
42093264 |
T |
|
| Q |
296 |
gagaattgatctcagatgcaggaactcaaaattgat |
331 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
42093265 |
gagaaatgaactcagatgcaggaactcaaaattgat |
42093300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 29706876 - 29707211
Alignment:
| Q |
1 |
catagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaactatatagctgatatc |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29706876 |
catagtcataagaaagtataatgtatttaagtctatttcactgtgtctaattgaatcttcacaacagatgttgcagtggaaaaactatatagctgatagt |
29706975 |
T |
|
| Q |
101 |
ataaatttgtttcannnnnnnctacttaaattggatgtaacagctgcagggcaa--ttaaca-catgttcttaattgtaacagatgcagga--tgaaaat |
195 |
Q |
| |
|
|||||| ||||| | |||| |||||| ||||||||| |||||| | | || || ||| ||||||||||||||||||||| || ||||||| |
|
|
| T |
29706976 |
ataaatatgttt-aattttttctacctaaattagatgtaacaactgcagtgaatgtttttcatcatcttcttaattgtaacagatgcaagaactgaaaat |
29707074 |
T |
|
| Q |
196 |
tgatagcttatgaagtacataactgaagcactgtttttcttatatgcaaagaattgaaaaagttcataaggga-gaataatattccaaatctcataatta |
294 |
Q |
| |
|
|||||||||| ||||||||||| ||| || || |||||| ||||||||||||| ||||||||||||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
29707075 |
tgatagcttaagaagtacataattgaggcgctaagtttcttgtatgcaaagaatttaaaaagttcataagggaagaatgatatttcaaatctcataatta |
29707174 |
T |
|
| Q |
295 |
tgagaattgatctcagatgcaggaactcaaaattgat |
331 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29707175 |
tgagaattgaattcagatgcaggaactcaaaattgat |
29707211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University