View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6228_high_6 (Length: 291)

Name: NF6228_high_6
Description: NF6228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6228_high_6
NF6228_high_6
[»] chr2 (4 HSPs)
chr2 (12-282)||(45338383-45338653)
chr2 (12-151)||(45336202-45336341)
chr2 (32-103)||(14662318-14662389)
chr2 (39-150)||(17648811-17648923)
[»] chr5 (2 HSPs)
chr5 (12-282)||(32800130-32800400)
chr5 (12-150)||(32797950-32798088)
[»] chr8 (2 HSPs)
chr8 (9-282)||(44733964-44734237)
chr8 (10-149)||(44731786-44731925)
[»] chr1 (2 HSPs)
chr1 (12-151)||(1550099-1550238)
chr1 (12-150)||(9535199-9535337)
[»] chr3 (7 HSPs)
chr3 (9-150)||(28784457-28784598)
chr3 (9-150)||(48707754-48707901)
chr3 (32-278)||(48025197-48025445)
chr3 (32-234)||(48024637-48024840)
chr3 (32-234)||(48024086-48024289)
chr3 (88-172)||(5907696-5907781)
chr3 (32-103)||(48027377-48027448)
[»] chr4 (3 HSPs)
chr4 (9-150)||(22804553-22804696)
chr4 (32-103)||(7231049-7231118)
chr4 (88-150)||(44640115-44640179)
[»] chr7 (2 HSPs)
chr7 (32-279)||(13108909-13109158)
chr7 (32-150)||(13111202-13111321)
[»] chr6 (1 HSPs)
chr6 (32-108)||(6723446-6723522)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 45338653 - 45338383
Alignment:
Q  12 atcatcacctaggactcttgcttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaaca 111  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45338653 atcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaaca 45338554  T
Q  112 caattaattattaaatcagaaaaatatcaatctccaacactcctccttgatatttttcttgaaaaaactccaaacattgatctcatctttcaaaccttca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45338553 caattaattattaaatcagaaaaatatcaatctccaacactcctccttgatatttttcttgaaaaaactccaaacattgatctcatctttccaaccttca 45338454  T
Q  212 tctgataaaacttcactggccaaatttctttatctgttgcagcggaaacacattgagctttagttgatgat 282  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45338453 tctgataaaacttcactggccaaatttctgtatctgttgcagcggaaacacattgagctttagttgatgat 45338383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 45336341 - 45336202
Alignment:
Q  12 atcatcacctaggactcttgcttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaaca 111  Q
    ||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45336341 atcattacctaggactcttacttaccaaataagcaacaatctaaatatgacacttaaacttacacaagcaacacattaattatgacagaaaataacaaca 45336242  T
Q  112 caattaattattaaatcagaaaaatatcaatctccaacac 151  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45336241 caattaattattaaatcagaaaaatatcaatctccaacac 45336202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 14662389 - 14662318
Alignment:
Q  32 cttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaa 103  Q
    ||||| ||||||||||| |||||| ||||||||||| || |||||||||||||| |||||||||||||||||    
T  14662389 cttactaaataagcaacgatctaattatgacacttatacataaacaagcaacactttaattatgacagaaaa 14662318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 17648923 - 17648811
Alignment:
Q  39 aataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataa-ca--acacaattaattattaaatcagaaaaa 135  Q
    ||||||||||||||||| ||||||| |  |||||||||||||||||   ||||||||||||||||  | ||  |||||| ||||||  ||| ||||||||    
T  17648923 aataagcaacaatctaattatgacatt--aacttaaacaagcaacaagctaattatgacagaaaaacagcagcacacaagtaattaacaaaacagaaaaa 17648826  T
Q  136 tatcaatctccaaca 150  Q
    |||||||||||||||    
T  17648825 tatcaatctccaaca 17648811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 32800400 - 32800130
Alignment:
Q  12 atcatcacctaggactcttgcttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaaca 111  Q
    ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32800400 atcattacctaggactcttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaaca 32800301  T
Q  112 caattaattattaaatcagaaaaatatcaatctccaacactcctccttgatatttttcttgaaaaaactccaaacattgatctcatctttcaaaccttca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32800300 caattaattattaaatcagaaaaatatcaatctccaacactcctccttgatatttttcttgaaaaaactccaaacattgatctcatctttccaaccttca 32800201  T
Q  212 tctgataaaacttcactggccaaatttctttatctgttgcagcggaaacacattgagctttagttgatgat 282  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32800200 tctgataaaacttcactggccaaatttctgtatctgttgcagcggaaacacattgagctttagttgatgat 32800130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 32798088 - 32797950
Alignment:
Q  12 atcatcacctaggactcttgcttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaaca 111  Q
    ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32798088 atcattacctaggactcttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaaca 32797989  T
Q  112 caattaattattaaatcagaaaaatatcaatctccaaca 150  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32797988 caattaattattaaatcagaaaaatatcaatctccaaca 32797950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 44734237 - 44733964
Alignment:
Q  9 gacatcatcacctaggactcttgcttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca 108  Q
    |||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44734237 gacatcattacctaggactcttacttaccaaataagcaacaacctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca 44734138  T
Q  109 acacaattaattattaaatcagaaaaatatcaatctccaacactcctccttgatatttttcttgaaaaaactccaaacattgatctcatctttcaaacct 208  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44734137 acacaattaatttttaaatcagaaaaatatcaatctccaacactcctccttgatatttttcttgaaaaaactccaaacattgatctcatctttccaacct 44734038  T
Q  209 tcatctgataaaacttcactggccaaatttctttatctgttgcagcggaaacacattgagctttagttgatgat 282  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44734037 tcatctgataaaacttcactggccaaatttctgtatctgttgcagcggaaacacattgagctttagttgatgat 44733964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 44731925 - 44731786
Alignment:
Q  10 acatcatcacctaggactcttgcttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaa 109  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44731925 acatcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaa 44731826  T
Q  110 cacaattaattattaaatcagaaaaatatcaatctccaac 149  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  44731825 cacaattaatttttaaatcagaaaaatatcaatctccaac 44731786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 1550238 - 1550099
Alignment:
Q  12 atcatcacctaggactcttgcttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaaca 111  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  1550238 atcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttatacaagcaacacattaattatgacataaaataacaaca 1550139  T
Q  112 caattaattattaaatcagaaaaatatcaatctccaacac 151  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1550138 caattaattattaaatcagaaaaatatcaatctccaacac 1550099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 9535337 - 9535199
Alignment:
Q  12 atcatcacctaggactcttgcttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaaca 111  Q
    ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9535337 atcattacctaggactcttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattttgacagaaaataacaaca 9535238  T
Q  112 caattaattattaaatcagaaaaatatcaatctccaaca 150  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  9535237 caattaattattaaaccagaaaaatatcaatctccaaca 9535199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 28784598 - 28784457
Alignment:
Q  9 gacatcatcacctaggactcttgcttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca 108  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  28784598 gacatcattacctaggactcttacttaccaaataagcaacaatctaactataacacttaaacttaaacaagcaacacattaattatgagagaaaataaca 28784499  T
Q  109 acacaattaattattaaatcagaaaaatatcaatctccaaca 150  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  28784498 acacaattaatttttaaatcagaaaaatatcaatctccaaca 28784457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 48707754 - 48707901
Alignment:
Q  9 gacatcatcacctaggactcttgcttaccaaataagcaacaatctaactatgacactt------aaacttaaacaagcaacacattaattatgacagaaa 102  Q
    |||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||    
T  48707754 gacatcattacctaggactcttacttaccaaataaacaacaatctaactatgacacttaaacttaaacttaaacaagcaacacattaattatgacagaaa 48707853  T
Q  103 ataacaacacaattaattattaaatcagaaaaatatcaatctccaaca 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48707854 ataacaacacaattaattattaaatcagaaaaatatcaatctccaaca 48707901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 48025197 - 48025445
Alignment:
Q  32 cttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaat-taattattaaatcag 130  Q
    ||||| |||||||||||||||||| ||||||| ||| || |||||||||||||| ||||||||||||||||| | ||  | ||  ||||||  ||| |||    
T  48025197 cttactaaataagcaacaatctaattatgacatttatacataaacaagcaacactttaattatgacagaaaacagcagtagaaaataattaacaaaacag 48025296  T
Q  131 aaaaatatcaatctccaacactcctccttgatatttttcttgaaaaaactccaaacattgatctcatctttcaaaccttcatctgataaaacttcactgg 230  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |  ||||||||||||||||||||||| |||    
T  48025297 aaaaatatcaatctccaacactcatccttgatatttttcttgaaaaaactccaagcattgacctcatctcttcaaccttcatctgataaaacttcattgg 48025396  T
Q  231 ccaaatttcttt-atctgttgcagcggaaacacattgagctttagttga 278  Q
    |||| ||| ||| || |||||||  || |||||| | | ||||||||||    
T  48025397 ccaagtttttttgatttgttgcattggtaacacactcaactttagttga 48025445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 32 - 234
Target Start/End: Original strand, 48024637 - 48024840
Alignment:
Q  32 cttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaat-taattattaaatcag 130  Q
    ||||| |||||||||||||||||| ||||||||||| || |||||| ||||||  ||||||||||||||||| | ||  | ||  ||||||  ||| ||     
T  48024637 cttactaaataagcaacaatctaattatgacacttatacataaacatgcaacattttaattatgacagaaaacagcagtagaaaataattaacaaaacat 48024736  T
Q  131 aaaaatatcaatctccaacactcctccttgatatttttcttgaaaaaactccaaacattgatctcatctttcaaaccttcatctgataaaacttcactgg 230  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |  ||| ||||||||||||||||||| |||    
T  48024737 aaaaatatcaatctccaacactcatccttgatatttttcttgaaaaaactccaagcattgacctcatctcttcaacattcatctgataaaacttcattgg 48024836  T
Q  231 ccaa 234  Q
    ||||    
T  48024837 ccaa 48024840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 32 - 234
Target Start/End: Original strand, 48024086 - 48024289
Alignment:
Q  32 cttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaat-taattattaaatcag 130  Q
    ||||| |||||||||||||||||| ||||||||||| || |||||||| ||||| ||||||||||||||||| | ||  | ||  ||||||  |||  ||    
T  48024086 cttactaaataagcaacaatctaattatgacacttatacataaacaagtaacactttaattatgacagaaaacagcagtagaaaataattaacaaaagag 48024185  T
Q  131 aaaaatatcaatctccaacactcctccttgatatttttcttgaaaaaactccaaacattgatctcatctttcaaaccttcatctgataaaacttcactgg 230  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| | | ||| |  ||| ||||||||||||||||||| |||    
T  48024186 aaaaatatcaatctccaacactcatccttgatatttttcttgaaaaaactccaagcattgaccccgtctcttcaacattcatctgataaaacttcattgg 48024285  T
Q  231 ccaa 234  Q
    ||||    
T  48024286 ccaa 48024289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 5907781 - 5907696
Alignment:
Q  88 taattatgacagaaaataacaa-cacaattaattattaaatcagaaaaatatcaatctccaacactcctccttgatatttttcttg 172  Q
    ||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||    
T  5907781 taattatgacagaaaattacaaacacaagtaattattaaaccagaaaaatatcaatctccaacactcatccttaatatttttcttg 5907696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 48027377 - 48027448
Alignment:
Q  32 cttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaa 103  Q
    ||||| |||||||||||||||||| ||||||||||| || |||||||||||||| | ||||||| |||||||    
T  48027377 cttactaaataagcaacaatctaattatgacacttatacataaacaagcaacacttaaattatggcagaaaa 48027448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 22804696 - 22804553
Alignment:
Q  9 gacatcatcacctaggactcttg--cttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataa 106  Q
    |||||||| |||||||||||||   ||||||||||||||| |||||||| |||| |||||||||||||||||||||| |||||||||||| |||||||||    
T  22804696 gacatcattacctaggactcttttacttaccaaataagcagcaatctaattatggcacttaaacttaaacaagcaacgcattaattatgagagaaaataa 22804597  T
Q  107 caacacaattaattattaaatcagaaaaatatcaatctccaaca 150  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  22804596 caacacaattaattattaaaccagaaaaatatcaatctccaaca 22804553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 7231049 - 7231118
Alignment:
Q  32 cttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaa 103  Q
    ||||| ||||||||| |||||||| |||||||||  |||||||||||||||||   ||||||||||||||||    
T  7231049 cttactaaataagcagcaatctaattatgacact--aacttaaacaagcaacaatctaattatgacagaaaa 7231118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 44640179 - 44640115
Alignment:
Q  88 taattatgacagaaaat-aacaacacaattaatt-attaaatcagaaaaatatcaatctccaaca 150  Q
    ||||||||||||||||  |||||||||| | ||| |||||| |||||||||||||||||||||||    
T  44640179 taattatgacagaaaaacaacaacacaaatcatttattaaaccagaaaaatatcaatctccaaca 44640115  T

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Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 32 - 279
Target Start/End: Original strand, 13108909 - 13109158
Alignment:
Q  32 cttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacacaat-taattattaaatcag 130  Q
    ||||| |||||||||||||||||| ||||||||||| |  |||||||||||||| ||||||||||||||||| |||||   ||  ||||||  ||| ||     
T  13108909 cttactaaataagcaacaatctaattatgacacttataaataaacaagcaacactttaattatgacagaaaacaacaatggaaaataattaacaaaacaa 13109008  T
Q  131 aaaa-atatcaatctccaacactcctccttgatatttttcttgaaaaaactccaaacattgatctcatctttcaaaccttcatctgataaaacttcactg 229  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||| |  ||||| ||||||||||||||||| ||    
T  13109009 aaaaaatatcaatctccaacactcctccttgatatttctcttgaaaaaacttcaagcattgacctcatctcttcaacctccatctgataaaacttcattg 13109108  T
Q  230 gccaaatttctttatctgttgcagcggaaacacattgagctttagttgat 279  Q
    | ||| ||| |  || ||||||||||| |||||| | | |||||||||||    
T  13109109 gtcaagtttttggatttgttgcagcggtaacacactcaactttagttgat 13109158  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 150
Target Start/End: Original strand, 13111202 - 13111321
Alignment:
Q  32 cttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca-acacaattaattattaaatcag 130  Q
    ||||| |||||||||||||||||| |||| |||||  || |||||||||||||| ||||||||||||||||| | ||   | || ||||||  ||| |||    
T  13111202 cttactaaataagcaacaatctaattatggcacttctacataaacaagcaacactttaattatgacagaaaacagcagtaaaaagtaattaacaaaacag 13111301  T
Q  131 aaaaatatcaatctccaaca 150  Q
    ||||||||||||||||||||    
T  13111302 aaaaatatcaatctccaaca 13111321  T

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Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 6723522 - 6723446
Alignment:
Q  32 cttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca 108  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||    
T  6723522 cttactaaataagcaacaatctaattatgacacttacacttaaacaagcaacactttaattatgacagaaaacaaca 6723446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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