View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6228_high_7 (Length: 253)

Name: NF6228_high_7
Description: NF6228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6228_high_7
NF6228_high_7
[»] chr3 (10 HSPs)
chr3 (1-84)||(5529017-5529099)
chr3 (1-80)||(9252176-9252254)
chr3 (3-80)||(35748927-35749003)
chr3 (1-55)||(19914357-19914411)
chr3 (5-78)||(9507230-9507302)
chr3 (5-78)||(9515205-9515277)
chr3 (1-54)||(23796100-23796153)
chr3 (16-80)||(15997159-15997222)
chr3 (16-80)||(26884978-26885041)
chr3 (4-80)||(42657818-42657893)
[»] chr7 (4 HSPs)
chr7 (1-84)||(2291103-2291185)
chr7 (1-57)||(16086973-16087029)
chr7 (38-86)||(35291325-35291372)
chr7 (1-57)||(43631082-43631138)
[»] chr1 (8 HSPs)
chr1 (1-76)||(48796352-48796426)
chr1 (3-83)||(24245484-24245563)
chr1 (1-80)||(30547933-30548011)
chr1 (5-80)||(51787469-51787543)
chr1 (5-79)||(6966236-6966309)
chr1 (1-79)||(24511902-24511979)
chr1 (1-57)||(12178922-12178978)
chr1 (1-57)||(25081785-25081841)
[»] chr5 (3 HSPs)
chr5 (1-81)||(39041310-39041389)
chr5 (1-57)||(2270811-2270867)
chr5 (36-80)||(6260376-6260419)
[»] chr4 (7 HSPs)
chr4 (1-80)||(46663649-46663727)
chr4 (3-80)||(408388-408464)
chr4 (1-80)||(30060535-30060613)
chr4 (1-80)||(33491606-33491684)
chr4 (5-80)||(53936512-53936586)
chr4 (1-54)||(43959024-43959077)
chr4 (1-57)||(51944751-51944807)
[»] chr6 (5 HSPs)
chr6 (5-80)||(9662085-9662159)
chr6 (1-80)||(21970630-21970708)
chr6 (1-80)||(29023624-29023702)
chr6 (5-80)||(242890-242964)
chr6 (1-80)||(18667692-18667770)
[»] chr2 (1 HSPs)
chr2 (5-80)||(6945669-6945743)
[»] chr8 (2 HSPs)
chr8 (1-57)||(36274591-36274647)
chr8 (5-80)||(9497866-9497940)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 5529017 - 5529099
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaagctcc 84  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||||||    
T  5529017 tcataaaattgatcattaatttatagatttgggatggaagagtaccggtacacctca-ttttaagagtgtaccgtagaagctcc 5529099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 9252176 - 9252254
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||||||||||||| ||||||||||||| |  || | ||||||||| ||||||||||  |||| ||||||||||||||||    
T  9252176 tcataaaattgatcgttaatttatagatatatgaagcaagagtaccggtacacctca-atttacgagtgtaccgtagaag 9252254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 35749003 - 35748927
Alignment:
Q  3 ataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    ||||||||||||||||||||||||||||  || | |||||||||  |||||||| | |||| ||||||| ||||||||    
T  35749003 ataaaattgatcattaatttatagatttatgaagcaagagtaccgatacacctc-tatttacgagtgtatcgtagaag 35748927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19914357 - 19914411
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacct 55  Q
    |||||||||||||| |||||||||||||||  || | ||||||||| ||||||||    
T  19914357 tcataaaattgatcgttaatttatagatttatgaagcaagagtaccggtacacct 19914411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 9507230 - 9507302
Alignment:
Q  5 aaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtaga 78  Q
    |||| ||||| |||||||||| | || ||||| ||||||||| |||||||||| | || |||||||||||||||    
T  9507230 aaaaatgatcgttaatttataaaattaagatgcaagagtaccggtacacctca-tcttgtgagtgtaccgtaga 9507302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 9515205 - 9515277
Alignment:
Q  5 aaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtaga 78  Q
    |||| ||||| |||||||||| | || ||||| ||||||||| |||||||||| | || |||||||||||||||    
T  9515205 aaaaatgatcgttaatttataaaattaagatgcaagagtaccggtacacctca-tcttgtgagtgtaccgtaga 9515277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23796100 - 23796153
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacc 54  Q
    |||||||||||||| |||||||||||||||  || | ||||||||| |||||||    
T  23796100 tcataaaattgatcgttaatttatagatttaggaagtaagagtaccggtacacc 23796153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 15997159 - 15997222
Alignment:
Q  16 ttaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||||||||| | || |||||  |||||||| ||||||||||| || ||||||||||||||||||    
T  15997159 ttaatttataaaattaagatgcgagagtaccggtacacctcatctt-atgagtgtaccgtagaag 15997222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 26885041 - 26884978
Alignment:
Q  16 ttaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||||||||| | || ||||| ||||||||| |||||||||| | || |||||||||||||||||    
T  26885041 ttaatttataaaattaagatgtaagagtaccggtacacctca-tcttgtgagtgtaccgtagaag 26884978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 42657893 - 42657818
Alignment:
Q  4 taaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||||||||||||||||||||||| ||  || | |||||||| || ||| ||||  ||||| |||||||||||||||    
T  42657893 taaaattgatcattaatttatagaattaggaagcaagagtacaagaacatctca-atttataagtgtaccgtagaag 42657818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 2291103 - 2291185
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaagctcc 84  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||||| |||||||||| ||||| ||||||||||||||||||||    
T  2291103 tcataaaattgatcattaatttataaatttgggatgaaagagtaccggtacacctca-ttttacgagtgtaccgtagaagctcc 2291185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 16087029 - 16086973
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctca 57  Q
    |||||||||||||| ||| |||||||||||  || | ||||||||| ||||||||||    
T  16087029 tcataaaattgatcgttagtttatagatttatgaagcaagagtaccggtacacctca 16086973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 35291372 - 35291325
Alignment:
Q  38 aagagtaccagtacacctcatttttatgagtgtaccgtagaagctccaa 86  Q
    ||||||||| ||||||||||||||  ||||||||||||||||| |||||    
T  35291372 aagagtaccggtacacctcattttg-tgagtgtaccgtagaagttccaa 35291325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 43631138 - 43631082
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctca 57  Q
    |||||||||||||| ||| |||||||||||  || | ||||||||| ||||||||||    
T  43631138 tcataaaattgatcgttagtttatagatttatgaagcaagagtaccggtacacctca 43631082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 48796352 - 48796426
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgta 76  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||    
T  48796352 tcataaaattgatcattaatttatagatttgggatggaagagtaccggtacacctca-ttttacgagtgtaccgta 48796426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 24245563 - 24245484
Alignment:
Q  3 ataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaagctc 83  Q
    |||||||||||||||||||||||||||||| |||||||||||||  ||||||||| ||||| |||||||||||| ||||||    
T  24245563 ataaaattgatcattaatttatagatttgaaatggaagagtaccgatacacctca-ttttacgagtgtaccgtaaaagctc 24245484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 30547933 - 30548011
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||||||||||||| ||| |||||||||||  || | ||||||||| ||||||||||  |||| ||||||||||||||||    
T  30547933 tcataaaattgatcgttagtttatagatttatgaagcaagagtacctgtacacctca-atttacgagtgtaccgtagaag 30548011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 51787543 - 51787469
Alignment:
Q  5 aaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||| |||||||||||||||| | || ||||| |||||||||  ||||||||| | ||||||||||||||||||||    
T  51787543 aaaaatgatcattaatttataaaattaagatgcaagagtaccgatacacctca-tcttatgagtgtaccgtagaag 51787469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 6966236 - 6966309
Alignment:
Q  5 aaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaa 79  Q
    ||||||||||||| ||||||| | || |||  || ||||||| |||||||||| |||| ||||||||||||||||    
T  6966236 aaaattgatcattcatttataaaattaagaatgaggagtaccggtacacctca-ttttgtgagtgtaccgtagaa 6966309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 24511902 - 24511979
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaa 79  Q
    |||||||||||||| ||| |||||| ||||  || | ||||||||| ||||||||||  |||| |||||||||||||||    
T  24511902 tcataaaattgatcgttagtttataaatttatgaagcaagagtaccggtacacctca-atttacgagtgtaccgtagaa 24511979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12178922 - 12178978
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctca 57  Q
    |||||||||| ||| |||||||||||||||  || | ||||||||| ||||||||||    
T  12178922 tcataaaattaatcgttaatttatagatttaggaagcaagagtaccggtacacctca 12178978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 25081841 - 25081785
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctca 57  Q
    |||||||||||||| ||| |||||||||||  ||   ||||||||||||||||||||    
T  25081841 tcataaaattgatcgttagtttatagatttatgaaacaagagtaccagtacacctca 25081785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 39041389 - 39041310
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaagc 81  Q
    ||||||||||||||||||||||||| |||||  ||| ||||||| |||||||||||| ||||| || ||||||||||||||    
T  39041389 tcataaaattgatcattaatttataaatttggaatgaaagagtatcagtacacctca-ttttacgattgtaccgtagaagc 39041310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2270867 - 2270811
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctca 57  Q
    |||||||||||||| |||||||||||||||  || | ||||||||| ||||||||||    
T  2270867 tcataaaattgatcgttaatttatagatttatgaagcaagagtaccggtacacctca 2270811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 6260376 - 6260419
Alignment:
Q  36 ggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||    
T  6260376 ggaagagtaccggtacacctca-ttttatgagtgtaccgtagaag 6260419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 46663649 - 46663727
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    ||||||||||||||||||||||||||||||  || | ||||||||| ||||||||||  |||| ||||||||||||||||    
T  46663649 tcataaaattgatcattaatttatagatttatgaagcaagagtaccggtacacctca-atttacgagtgtaccgtagaag 46663727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 408388 - 408464
Alignment:
Q  3 ataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||||||||||| ||| |||||||||||  || | ||||||||| ||||||||||  |||| ||||||||||||||||    
T  408388 ataaaattgatcgttagtttatagatttatgaagcaagagtaccggtacacctca-atttacgagtgtaccgtagaag 408464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 30060613 - 30060535
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||||||||||||| ||| |||||||||||  || | ||||||| | ||||||||||  |||| ||||||||||||||||    
T  30060613 tcataaaattgatcgttagtttatagatttatgaagcaagagtatcggtacacctca-atttacgagtgtaccgtagaag 30060535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 33491684 - 33491606
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||||||||||||| ||| |||||||||||  || | ||||||||| |||||| |||  |||| ||||||||||||||||    
T  33491684 tcataaaattgatcgttagtttatagatttatgaagcaagagtaccggtacacttca-atttacgagtgtaccgtagaag 33491606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 53936586 - 53936512
Alignment:
Q  5 aaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||| ||||| |||||||||| | || ||||| |||||||||  |||||||||| || ||||||||||||||||||    
T  53936586 aaaaatgatcgttaatttataaaattaagatgcaagagtaccgatacacctcatctt-atgagtgtaccgtagaag 53936512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43959077 - 43959024
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacc 54  Q
    |||||||||||||| |||||||||||||||  || | ||||||||| |||||||    
T  43959077 tcataaaattgatcgttaatttatagatttaggaagtaagagtaccggtacacc 43959024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 51944751 - 51944807
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctca 57  Q
    ||||||||||||||||||||||||| ||||  || | || ||||||| |||||||||    
T  51944751 tcataaaattgatcattaatttataaatttatgaagcaaaagtaccaatacacctca 51944807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 9662085 - 9662159
Alignment:
Q  5 aaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||| |||||||||||||||| | || ||||| |||||||||  ||||||||| | ||||||||||||||||||||    
T  9662085 aaaaatgatcattaatttataaaattaagatgcaagagtaccgatacacctca-tcttatgagtgtaccgtagaag 9662159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 21970630 - 21970708
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||||||||||||| |||||||||||||||  || | ||||||||| |||||||  |  |||||||||||||||||||||    
T  21970630 tcataaaattgatcgttaatttatagatttaggaagtaagagtaccggtacaccaga-atttatgagtgtaccgtagaag 21970708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 29023702 - 29023624
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||||||||||||| ||| |||||||||||  || | ||||||||| ||||||||||  |||| ||||||||||||||||    
T  29023702 tcataaaattgatcgttagtttatagatttatgaagcaagagtaccggtacacctca-atttacgagtgtaccgtagaag 29023624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 242964 - 242890
Alignment:
Q  5 aaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||| ||||| |||||||||| | || ||||| ||||||| | |||||||||| | ||||||||||||||||||||    
T  242964 aaaaatgatcgttaatttataaaattaagatgcaagagtatcggtacacctca-tcttatgagtgtaccgtagaag 242890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 18667770 - 18667692
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||||||||||||| |||||||||||||||  ||   ||||||||| ||||||| ||  |||| ||||||||||||||||    
T  18667770 tcataaaattgatcgttaatttatagatttaggaattaagagtaccggtacaccaca-atttacgagtgtaccgtagaag 18667692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 6945669 - 6945743
Alignment:
Q  5 aaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||| ||||| |||||||||| | || ||||| ||||||||| |||||||||| | ||||||||||||||||||||    
T  6945669 aaaaatgatcgttaatttataaaattaagatgcaagagtaccggtacacctca-tcttatgagtgtaccgtagaag 6945743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 36274647 - 36274591
Alignment:
Q  1 tcataaaattgatcattaatttatagatttgagatggaagagtaccagtacacctca 57  Q
    |||||||||||||| |||||||||| ||||  || | ||||||||||||||||||||    
T  36274647 tcataaaattgatcgttaatttatatatttaggaagcaagagtaccagtacacctca 36274591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 9497866 - 9497940
Alignment:
Q  5 aaaattgatcattaatttatagatttgagatggaagagtaccagtacacctcatttttatgagtgtaccgtagaag 80  Q
    |||| |||||||||||||||| | || ||||| |||||||||  ||||||||| | || |||||||||||||||||    
T  9497866 aaaaatgatcattaatttataaaattaagatgcaagagtaccgatacacctca-tcttgtgagtgtaccgtagaag 9497940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University