View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6228_low_2 (Length: 523)
Name: NF6228_low_2
Description: NF6228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6228_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 20 - 516
Target Start/End: Original strand, 28195577 - 28196072
Alignment:
| Q |
20 |
aaaaattgaaagataatgataataatcaataatgatgattatgttgaaaaattgaagaagattaaggaattgaaataggtaattacgaatttgagagaaa |
119 |
Q |
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| T |
28195577 |
aaaaattgaaagataatgataataatcaataatgatgattatgttgaaaaattgaagaagattaaggaattgaaataggtaattacgaatttgagagaaa |
28195676 |
T |
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| Q |
120 |
aaattggagtagcnnnnnnnnnnnnnnnnnnctgcgagttaaggttgatgtggtcgatagaattttgcgagcgaagaaaattgggaccttatatacccta |
219 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
28195677 |
aaattggagtagcgttgttgttgttgttgttctgcgagttaaggttgatgtggttgatagaattttgcgagcgaagaaaattggggcattatatacccta |
28195776 |
T |
|
| Q |
220 |
gaatttggagttgagggtatatatagaggaagcttggagaacagattgtaattaccatcgtgtcctcataaatgtttgtaaagcccagcccacaaaaacg |
319 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28195777 |
gaatttggagttgaggctatatatagaggaagcttggagaacagattgtaattaccatcgtgtcctcataaatgtttgtaaagcccagcccacaaaaaca |
28195876 |
T |
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| Q |
320 |
ttgaagttgaatttacaggattaattactttcagcaccccccaaaaaattccgtagataattttttccattaacattgatatacacatcccactaattca |
419 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28195877 |
ttgaagttgaatttacaggattaattactttcagc-ccccccaaaaaattccgtagataattttttccattaacattgatatacacatcccactaattca |
28195975 |
T |
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| Q |
420 |
aaatacaaaaacctctcattgatgtcacacaacattaacaactcatttacacataccttacttcgttttttcatctccttctcatgtgcctttgcta |
516 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28195976 |
aaatacaaaaacctctcatagatgtcacacaacattaacaactcatttacacataccttacatcgttttttcatctccttctcatgtgcctttgcta |
28196072 |
T |
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