View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6228_low_3 (Length: 409)
Name: NF6228_low_3
Description: NF6228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6228_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 46633131 - 46632754
Alignment:
| Q |
20 |
gcacaaggtacacactcagtacctatctccctctggctgcaatcaaaacaatgtaacaaagcaattaatgacttatccgatatannnnnnnnncttcttc |
119 |
Q |
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| T |
46633131 |
gcacaaggtacacactcagtacctatctccctctggctgcaatcaaaacaatgtaacaaagcaattaatgacttatccgatatatttttttt--ttcttc |
46633034 |
T |
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| Q |
120 |
aaacgattgtatgataaaaactagtactactcacatcatatgcaacaagggatctgcagtaattagtgtttgtgagcattgtacttgtcgaaccacactc |
219 |
Q |
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| T |
46633033 |
aaacgattgtatgataaaaactagtactactcacatcatatgcaacaagggatctgcagtaattagtgtttgtgagcattgtacttgtcgaaccacactc |
46632934 |
T |
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| Q |
220 |
gctgtctttgagtgaaactgccgatctgtcaagcttaattgaccatggatattggtagttctgagcagctgcacctacttgtgaagatgacctctgcatc |
319 |
Q |
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| T |
46632933 |
gctgtctttgagtgaaaccgccgatctgtcaagcttaattgaccatggatattggtagttctgagcagctgcacctacttgtgaagatgacctctgcatc |
46632834 |
T |
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| Q |
320 |
ctcactggcctaggaacatttcttccttcaaccgaaattctccgccgactcagttgcctctcaaatgaatcaggcctttg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46632833 |
ctcactggcctaggaacatttcttccttcaaccgaaattctccgccgactcagttgcctctcaaatgaatcaggcctttg |
46632754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 147 - 381
Target Start/End: Complemental strand, 15507302 - 15507065
Alignment:
| Q |
147 |
tactcacatcatatgcaacaagggatctgcagtaattagtgtttgtgagcattgtacttgtcga---accacactcgctgtctttgagtgaaactgccga |
243 |
Q |
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|||||||| ||||| |||||| ||| ||||||| |||| |||||| || | ||||||||| || ||||| ||| || || |||||||||||| || |
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| T |
15507302 |
tactcacactatatgaaacaagagatttgcagtagttagagtttgttagtactgtacttgtggagccaccaccctcactctcattgagtgaaactaagga |
15507203 |
T |
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| Q |
244 |
tctgtcaagcttaattgaccatggatattggtagttctgagcagctgcacctacttgtgaagatgacctctgcatcctcactggcctaggaacatttctt |
343 |
Q |
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|| |||||||| ||||||||||||||||||||||| || |||| |||| || ||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
15507202 |
cctatcaagctttattgaccatggatattggtagttttgtgcagtgacaccaacctgtgaagatgacctcatcatcctcactggccttggaacatttctt |
15507103 |
T |
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| Q |
344 |
ccttcaaccgaaattctccgccgactcagttgcctctc |
381 |
Q |
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||||| || ||| ||| ||||||||| |||| ||||| |
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| T |
15507102 |
ccttccacagaagctcttcgccgactcggttgtctctc |
15507065 |
T |
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