View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6228_low_5 (Length: 339)
Name: NF6228_low_5
Description: NF6228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6228_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 36475755 - 36475427
Alignment:
| Q |
1 |
gttgggctgatcgatatatattaatcaagatagttctacttttattacatgactacttttattagtaatattttcaaggtgaattgaattgagtttattc |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36475755 |
gttgggctgatcaatatatattaatcaagatagttctacttttattacatgcctacttttattagtaatattttcaagttgaattgaattgagtttattc |
36475656 |
T |
|
| Q |
101 |
ccttaaaaaatgtttaatcttcaatttatctttgaaaaatggtgattaaacaaataagttaattttccaaagaaatggagtaagtgtatatca-tggtat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36475655 |
ccttaaaaaatgtttaatcttcaatttatctttgaaaaatggtgattaaacaaataagttaattttccaaagaaatggagtaagtgtatatcattggtat |
36475556 |
T |
|
| Q |
200 |
taaattgcagttgtagttgtgggaaaatgtggtttgtgatgtcgacttagcagttgtgatgccgtcgtcagggactgatctagaaatttcgactagtgga |
299 |
Q |
| |
|
||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36475555 |
taaattgcagtcgtggtcgtgggaaaatgtggtttgtgatgtcgacttagcagttgtgatgctggcgtcagggactgatctagaaatttcgactagtgga |
36475456 |
T |
|
| Q |
300 |
ggtaattatcttactacactctatttcat |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36475455 |
ggtaattatcttactacactctatttcat |
36475427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University