View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6228_low_8 (Length: 244)
Name: NF6228_low_8
Description: NF6228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6228_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 36475946 - 36476185
Alignment:
| Q |
1 |
cgcctcatattattttctaatttgttctattttacaggttcagtttctagttcttgtgcaaaatttggttcattgttgttagcacttgcagccacacgtt |
100 |
Q |
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| T |
36475946 |
cgcctcatattattttctaatttgttctattttacaggttcagtttctagttcttgtgcaaaatttggttcattgttgttagcacttgcagccacacgtt |
36476045 |
T |
|
| Q |
101 |
cacatacaaatcattattaacgacacttgaggaacaacactctgcaccaaatcagctgctctcctcaagact-------------gatcctcattctccc |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
36476046 |
cacatacaaatcattattaacgacacttgaggaacaacactctgcaccaaatcagctgctctcctcaaaactgcagtggaatttcgatcctcattctccc |
36476145 |
T |
|
| Q |
188 |
aaatttttcagtttattttccaccaaattccccacatggt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
36476146 |
aaatttttcagtttattttccaccaaattccccacatggt |
36476185 |
T |
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