View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6228_low_9 (Length: 204)

Name: NF6228_low_9
Description: NF6228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6228_low_9
NF6228_low_9
[»] chr6 (8 HSPs)
chr6 (1-192)||(10543131-10543322)
chr6 (108-196)||(6389707-6389795)
chr6 (106-140)||(22965912-22965946)
chr6 (106-140)||(23822447-23822481)
chr6 (108-141)||(12235526-12235559)
chr6 (108-141)||(34446584-34446617)
chr6 (108-176)||(6299496-6299564)
chr6 (108-176)||(6306306-6306374)
[»] chr4 (5 HSPs)
chr4 (111-198)||(7012029-7012115)
chr4 (108-192)||(24343475-24343559)
chr4 (62-101)||(3144584-3144623)
chr4 (107-141)||(31243554-31243588)
chr4 (109-141)||(20743286-20743318)
[»] chr5 (3 HSPs)
chr5 (108-192)||(26205767-26205851)
chr5 (109-192)||(19293431-19293514)
chr5 (108-198)||(21137651-21137741)
[»] chr7 (3 HSPs)
chr7 (125-198)||(19206012-19206085)
chr7 (108-198)||(4017801-4017891)
chr7 (109-141)||(23930238-23930270)
[»] chr1 (1 HSPs)
chr1 (67-192)||(398735-398856)
[»] chr3 (4 HSPs)
chr3 (94-141)||(20691338-20691385)
chr3 (109-191)||(25652039-25652121)
chr3 (108-141)||(1830362-1830395)
chr3 (108-192)||(24205048-24205132)
[»] chr2 (3 HSPs)
chr2 (108-185)||(24011012-24011088)
chr2 (108-184)||(10535766-10535842)
chr2 (108-140)||(11308011-11308043)
[»] scaffold0314 (1 HSPs)
scaffold0314 (116-156)||(8952-8992)
[»] chr8 (1 HSPs)
chr8 (65-141)||(34897104-34897180)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 9e-69; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 10543322 - 10543131
Alignment:
Q  1 tatgagaaccattcaagtcaagaatggcttgaattgaaacccnnnnnnnnataatagtcgttatctatgaagcacggacacttctgagattaggtgtgtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||  |||||||||||||||||||||||    
T  10543322 tatgagaaccattcaagtcaagaatggcttgaattgaaacccttttttttataatagtcgttatctatgaagcacaaacacttctgagattaggtgtgtc 10543223  T
Q  101 tgacattgacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtc 192  Q
    |||||  |||||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  10543222 tgacaccgacacccatgattacgttgaattatgtcatttttagaaaattttatcgaagttggcgtgttggtgttcgtgtcgtgtctggtgtc 10543131  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 6389795 - 6389707
Alignment:
Q  108 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtctgtg 196  Q
    ||||||||||||||| || |||||| ||||||||  ||| | |||||   ||||||||||  |||||||||||||||| ||||||||||    
T  6389795 gacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtctgtg 6389707  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 22965912 - 22965946
Alignment:
Q  106 ttgacacctatgattacgctgaattatgtcatttt 140  Q
    ||||||||||||||||||||||||||| |||||||    
T  22965912 ttgacacctatgattacgctgaattatatcatttt 22965946  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 23822481 - 23822447
Alignment:
Q  106 ttgacacctatgattacgctgaattatgtcatttt 140  Q
    ||||||||||||||||||||||||||| |||||||    
T  23822481 ttgacacctatgattacgctgaattatatcatttt 23822447  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 12235526 - 12235559
Alignment:
Q  108 gacacctatgattacgctgaattatgtcattttc 141  Q
    ||||||||||||||| ||||||||||||||||||    
T  12235526 gacacctatgattacactgaattatgtcattttc 12235559  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 34446617 - 34446584
Alignment:
Q  108 gacacctatgattacgctgaattatgtcattttc 141  Q
    ||||||||||||||| ||||||||||||||||||    
T  34446617 gacacctatgattacactgaattatgtcattttc 34446584  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 6299564 - 6299496
Alignment:
Q  108 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccg 176  Q
    ||||||||| |||||  |||||||| ||||||||  ||| | ||||| | |||||||||||||||||||    
T  6299564 gacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgttggtgtccg 6299496  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 6306374 - 6306306
Alignment:
Q  108 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccg 176  Q
    ||||||||| |||||  |||||||| ||||||||  ||| | ||||| | |||||||||||||||||||    
T  6306374 gacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgttggtgtccg 6306306  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 7012115 - 7012029
Alignment:
Q  111 acctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtctgtgct 198  Q
    ||||||||| || ||||||||||||||||||  ||| | ||||||  |||||||||| |||||||||||| ||||| |||||||||||    
T  7012115 acctatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgtgtcggtgtccgtgtcctgtct-gtgtctgtgct 7012029  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 24343559 - 24343475
Alignment:
Q  108 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtc 192  Q
    ||||||||| ||||| ||||||||||| ||||||  ||| | |||||   |||||||||| || |||||||||||||| ||||||    
T  24343559 gacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtc 24343475  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 3144584 - 3144623
Alignment:
Q  62 tatctatgaagcacggacacttctgagattaggtgtgtct 101  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  3144584 tatctatgaagcacggacacttctcggattaggtgtgtct 3144623  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 31243554 - 31243588
Alignment:
Q  107 tgacacctatgattacgctgaattatgtcattttc 141  Q
    |||||||||||||||| ||||||||||||||||||    
T  31243554 tgacacctatgattacactgaattatgtcattttc 31243588  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 20743286 - 20743318
Alignment:
Q  109 acacctatgattacgctgaattatgtcattttc 141  Q
    |||||||||||||| ||||||||||||||||||    
T  20743286 acacctatgattacactgaattatgtcattttc 20743318  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 26205767 - 26205851
Alignment:
Q  108 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtc 192  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||||   ||| |||||  |||||| |||| |||| ||||||    
T  26205767 gacacctatgattacactgaattatgtcattttctcaaaattttatcggtatcgacgtgtcagtgtccatgtcatgtccggtgtc 26205851  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 19293431 - 19293514
Alignment:
Q  109 acacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtc 192  Q
    |||| ||||||||| || |||||||| ||||||  ||| | |||| |  ||| ||||||||||||| |||||||||||||||||    
T  19293431 acacatatgattacacttaattatgttattttcttaaattattattggtgtcagcgtgttggtgtctgtgtcgtgtctggtgtc 19293514  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 21137741 - 21137651
Alignment:
Q  108 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtctgtgct 198  Q
    ||||||||||||| | |||||||| |||||||||  | | | ||| ||| ||||||||||  |||||||||| ||||| |||||| |||||    
T  21137741 gacacctatgatttcactgaattacgtcattttctcagattattaccgatgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgtgct 21137651  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 19206085 - 19206012
Alignment:
Q  125 tgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtctgtgct 198  Q
    |||||||||| ||||||  ||| | ||| ||  |||||||||||||||||||||||||||||||| || |||||    
T  19206085 tgaattatgtgattttctcaaattattagcggtgtcggcgtgttggtgtccgtgtcgtgtctggtatccgtgct 19206012  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 4017801 - 4017891
Alignment:
Q  108 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtctgtgct 198  Q
    ||||| ||||||||| || |||||| || |||||  ||| | |||||   |||||||||| |||||||||||||||||  |||||||||||    
T  4017801 gacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcggcgtgtcggtgtccgtgtcgtgtccagtgtctgtgct 4017891  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 23930270 - 23930238
Alignment:
Q  109 acacctatgattacgctgaattatgtcattttc 141  Q
    |||||||||||||| ||||||||||||||||||    
T  23930270 acacctatgattacactgaattatgtcattttc 23930238  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 192
Target Start/End: Original strand, 398735 - 398856
Alignment:
Q  67 atgaagcacggacacttctgagattaggtgtgtctgacattgacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtg 166  Q
    ||||||||||||||||||| |||||||| |||||       ||||||||| ||||| ||||||||||| |||||   ||| | ||| ||  |||||||||    
T  398735 atgaagcacggacacttcttagattaggcgtgtcccg----gacacctataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtg 398830  T
Q  167 ttggtgtccgtgtcgtgtctggtgtc 192  Q
    |  |||||||||||||||| ||||||    
T  398831 tcagtgtccgtgtcgtgtccggtgtc 398856  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 20691385 - 20691338
Alignment:
Q  94 gtgtgtctgacattgacacctatgattacgctgaattatgtcattttc 141  Q
    ||||||||||||  ||||| ||||||||| ||||||||||||||||||    
T  20691385 gtgtgtctgacaccgacacatatgattacactgaattatgtcattttc 20691338  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 25652039 - 25652121
Alignment:
Q  109 acacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgt 191  Q
    |||||||| | ||| ||||||||| ||||||||  ||| | |||||   || |||||||| ||||||||||||||||||||||    
T  25652039 acacctataactacactgaattatatcattttctcaaattattatccgtgttggcgtgttagtgtccgtgtcgtgtctggtgt 25652121  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 1830395 - 1830362
Alignment:
Q  108 gacacctatgattacgctgaattatgtcattttc 141  Q
    ||||||||||||||| ||||||||||||||||||    
T  1830395 gacacctatgattacactgaattatgtcattttc 1830362  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 24205048 - 24205132
Alignment:
Q  108 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtc 192  Q
    ||||| ||| ||||| ||| ||||||||||||||  ||| | |||||   ||||||||||  |||||||||||||||| ||||||    
T  24205048 gacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtc 24205132  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 24011088 - 24011012
Alignment:
Q  108 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtc 185  Q
    ||||||||||||||| || |||||||||||||||  ||| | ||||| | |||||||| |||||||  ||||||||||    
T  24011088 gacacctatgattacactaaattatgtcattttctcaaattattatcaatgtcggcgt-ttggtgtttgtgtcgtgtc 24011012  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 10535766 - 10535842
Alignment:
Q  108 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgt 184  Q
    ||||| ||||||||| ||||||||||||||||||  ||| | ||||||  |||||||| || || || |||||||||    
T  10535766 gacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcggcgtattagtatctgtgtcgtgt 10535842  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 11308011 - 11308043
Alignment:
Q  108 gacacctatgattacgctgaattatgtcatttt 140  Q
    ||||||||||||||| |||||||||||||||||    
T  11308011 gacacctatgattacactgaattatgtcatttt 11308043  T

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Target: scaffold0314 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 8992 - 8952
Alignment:
Q  116 tgattacgctgaattatgtcattttcagaaaattttatcga 156  Q
    |||||||| |||||||||||||||||  |||||||||||||    
T  8992 tgattacgttgaattatgtcattttctcaaaattttatcga 8952  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 34897180 - 34897104
Alignment:
Q  65 ctatgaagcacggacacttctgagattaggtgtgtctgacattgacacctatgattacgctgaattatgtcattttc 141  Q
    |||||||||||||||||| ||   ||||  |||||| ||||| ||||| ||| ||||| ||||||||||| ||||||    
T  34897180 ctatgaagcacggacactcctcgaattacatgtgtccgacatcgacacatataattacactgaattatgtgattttc 34897104  T

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