View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6229_low_1 (Length: 497)
Name: NF6229_low_1
Description: NF6229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6229_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 23 - 454
Target Start/End: Complemental strand, 48416907 - 48416476
Alignment:
| Q |
23 |
cccaggtgctcatttcaagtggtgtgttttttggttcttcgccatatcaggcaaaataagttgatctcttgcgtacacttaaagacgccaacaataaata |
122 |
Q |
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| T |
48416907 |
cccaggtgctcatttcaagtggtgtgttttttggttcttcgccatatcaggcaaaataagttgatctcttgcgtacacttaaagacgccaacaataaata |
48416808 |
T |
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| Q |
123 |
agccaaaagaagacattaattgtatgacagcacaacaaaagtaacctaagcaaggatcaacaaaggcaacatttaactcgatcgtgattcggtggtgtaa |
222 |
Q |
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| T |
48416807 |
agccaaaagaagacattaattgtatgacagcacaacaaaagtaacctaagcaaggatcaacaaaggcaacatttaactcgatcgtgattcggtggtgtaa |
48416708 |
T |
|
| Q |
223 |
taaagcaggcaattttcatattattagatctcgatcattaattaaaattcgaacggttcaaattaatatagttataaaatctttctaaacggtctcaatc |
322 |
Q |
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| T |
48416707 |
taaagcacgcaattttcatattattagatctcgatcattaattaaaattcgaccggttcaaattaatatagttataaaatctttctaaacgatctcaatc |
48416608 |
T |
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| Q |
323 |
acatgttttagattggatggtcttgatttgttacgtgttacaacatctcatctatctatgatgttaataattatgactttactttatgggattcaacacc |
422 |
Q |
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| T |
48416607 |
acatgttttagattggatggtcttgatttgttacgtgttacaacatcccatctatctatggtgttaataattatggctttactttatgggattcaacacc |
48416508 |
T |
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| Q |
423 |
tttgtttattttgacagattgaataaaaattg |
454 |
Q |
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| T |
48416507 |
ttcgtttattttgacagattaattaaaaattg |
48416476 |
T |
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Back To:
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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 356
Target Start/End: Complemental strand, 35003536 - 35003430
Alignment:
| Q |
250 |
atctcgatcattaattaaaattcgaacggttcaaattaatatagttataaaatctttctaaacggtctcaatcacatgttttagattggatggtcttgat |
349 |
Q |
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||||||| ||||||||||| | ||| ||||||||| ||| | |||||||||| ||| || | |||||| |||||||||||||| ||||| || |||| |
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| T |
35003536 |
atctcgaccattaattaaagattgaatggttcaaatcaatgcaattataaaatcattcaaaccaatctcaaccacatgttttagatcggatgatcctgat |
35003437 |
T |
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| Q |
350 |
ttgttac |
356 |
Q |
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| T |
35003436 |
ttgttac |
35003430 |
T |
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