View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6229_low_3 (Length: 369)
Name: NF6229_low_3
Description: NF6229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6229_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 35526328 - 35526676
Alignment:
| Q |
1 |
tttaaagcgagatgatatgaatcaaggttatctaacaaaatcaacctcgggtatttatggttcaaggttatcataaacatcactatcatgaattctctct |
100 |
Q |
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| T |
35526328 |
tttaaagcgagatgatatgaatcaaggttatctaacaaaatcaacctcgggtatttatggttcaaggttatcataaacatcactatcatgaattctctct |
35526427 |
T |
|
| Q |
101 |
tgcccacctttgacctctacaaatatctattgacataaattttgaggcaattatggtatgataatgagaagctgagtaatttaaagaataaattgcacta |
200 |
Q |
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| T |
35526428 |
tgcccacctttgacctctacaaatatctattgacataaattttgaggcaattatggtatgataatgagaagctgagtaatttaaagaataaattgcacta |
35526527 |
T |
|
| Q |
201 |
acttgattttagtttggctccctgtatgatttatactaataaatttaggatggcttaatataaacatggaaataactatctgagcaaagaggacaacgtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35526528 |
acttgattttagtttggctccctgtatgatttatactaataaatttaggatggcttaatataaacatggaaataactatctgagcaaagaggacaacatt |
35526627 |
T |
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| Q |
301 |
atcaaaaagttaaaaaatggatatgctatatgcaagcactatacaagat |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35526628 |
atcaaaaagttaaaaaatggatatgctatatgcaagcactatacaagat |
35526676 |
T |
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